Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3719 ATGACGAACCTTCCTCCTGGGTTTTGCTTCTCTCCAACAGATGAAGAACTCATCCTTCACTTTCTTTATTCCAGAATTTCTCTACCATTCCATCCCAGCATCATACCGGACCTTGATCCCTCTCAACTTCATCCATGTCAATTAAATGGTAAGGCGTTTTCAAGTGGGAATCAACACTATTTCTTCACCAATAAAGTGAAGGAAAACAGAAGCACAGAAAATGGGTATTGGAAGGAAATAGGTTTGAGCGAACCTATAATCTCAGCTGATGCAAACAAGAAATTGGGAATCAAGAAGTATTTTGTCTTCAATCTTAACGAAGGCACAGAAACCAATTGGGTCATGCAGGAATACCATATTTCCTCATCTATGTTCCACAACCCTATTTCGTGTTATGCAAATGGAACTGCTCATCGAAGATTATTAAAACCTGATCAAAATCAGAACAATAAATGGGTTTTGTGCAGAGTGTATGAGAAGAACAAGTCACAATCACAACAAGGTGCAACTGCAAACTCCTACTATAGCGACGAGGATGATTGTGGATCAGAACTTTCATATCTAGATGAGGTTTATCTGTCACTTGATGATGATCTTGAAGTCATAAGCCCCCCTAATTAA 621 0.3913 MTNLPPGFCFSPTDEELILHFLYSRISLPFHPSIIPDLDPSQLHPCQLNGKAFSSGNQHYFFTNKVKENRSTENGYWKEIGLSEPIISADANKKLGIKKYFVFNLNEGTETNWVMQEYHISSSMFHNPISCYANGTAHRRLLKPDQNQNNKWVLCRVYEKNKSQSQQGATANSYYSDEDDCGSELSYLDEVYLSLDDDLEVISPPN* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3719 206 Gene3D NAC domain 13 165 IPR036093 GO:0003677|GO:0006355
Amo13g3719 206 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 2 200 - -
Amo13g3719 206 SUPERFAMILY NAC domain 2 160 IPR036093 GO:0003677|GO:0006355
Amo13g3719 206 PANTHER NAC TRANSCRIPTION FACTOR 56 2 200 - -
Amo13g3719 206 ProSiteProfiles NAC domain profile. 4 160 IPR003441 GO:0003677|GO:0006355
Amo13g3719 206 Pfam No apical meristem (NAM) protein 5 120 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3719 Amo-Chr13 125735019 125736208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3719 3 164 NAC Transcription Factor Family AT1G61110 36.416 4.10e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo13g3719 NAM 8.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3719 - - gmx:100779578 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3719 13 125735019 125736208 Amo13g3719 13 125735019 125736208 ECH