Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3706 CAATTTCACTTCCTGTTAAAACACCCCAAGCCATGGACAAGCGAATCTGGTTGGAATGCCTCCATTGATTCTTTTTCGTCTGTCACTACGCCCAAGCCCTCAGGAGTTATGACTTGTTTTGGGCGTTTCCAACCTCCGGATCATGACGTTTTTCTTGCGTTTAACTCCAAACAGCAGCATGAATTGGCGTTTAACGGCAAGTTACCGCGCCAATTGGACTCTGTAGCTCCAGGAAAATCCATTTTGAGTGCATGGAGGTCAGAATCCACAGCATCAGCAGTCCTTTTTCAGCCTAAGTCAGATTTTTTTGCTCAGCTCCCTCAATTCAGCCAGAAAAATACCTGGAATGAAATCAAAGAAAAAAACACACAAACTCATACCTCTCCGCGAACGTCCGATCGCGCCGCACCATCCCCGGACAGCTTCTTTCGCGCTGCCCACCCGCCGCCTGCCGTGCAACCTCCCCTTTCCTCATCATTTTCATATGTTCGTTCTTTTTTATACGGAGTTTCAGATGACGAGAAGAAGACCAAGCTGAAGTTGCAGGGTCGTCGCCGCCTCTGCAAAGTTGCGACTTCAGACGATCGTGATAAGGAGGCAGCGGTTGATGAATCCAGGTTCGATGAGCTCATCGAGCTTGATTCGCCACTTCCGGCACCCAAAAACGTGATCCAGATTGACGAGAGTGTCGGTAAGAACGACATTAGGGATATTTTGAATGAGTTGAATTCAAAGTTCGAGTTGCTGTCAGTTGAGAGGAAGCGAGAGACGAAGCAGGTGAAACCGATTGAGGGTTCTTCAGCTTTGTTTAGAGGAAAGGAAACTTATGAGGATGATGAGGTCGTAGAGTTCGGGAGTGCGGGGTCTTCATTCTCTCCACAGAAGGATCCGAGTAACGACCCGTCACAGGGTGCCAAGTATGCTGTTGGTGATGCCGGAATTGAGTATGTGGAAGATGATGACTCTCCTGCCAAGGATGCTGGTGGTGATGGTGGAATTGAGTATGTGCAAGATGATGACTCAGATGATTCTGTTGAAGAATTGGTTAATTTTGAGCCAAAGGGTGATGGCTCCATCACTCTGCCAGGCCCCAAATATACTTTTAAGTTGCCCTCTAAAATTGCGAAAATGTTGTATCCACATCAGAGGGATGGATTGAAGTGGCTCTGGTCTTTGCATTGTTTGGGTAAAGGTGGAATCTTGGGAGATGACATGGGTTTGGGGAAAACAATGCAGATGTGTGGCTATCTTGCTGGACTCTTTCATTCTCGAATTATTAAAAGGGCATTGGTTGTGGCCCCAAAAACCTTGTTGCCCCATTGGATCAAGGAATTATCCGCTGTTGGTCTTTCTGAAAAGACGAGAGAATATTTTGGAACTAATACAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGGATAAAGGTGTTCTTCTAACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTGCGAGGGAGTTATCATTTTGATGATGAGGACAATGAAGATGGTGCCACATGGGACTATATGATCCTTGATGAGGGGCACCTTATAAAGAACCCAAGCACACAGAGGGCTAAAAGTTTGCTTGAGATACCATGTAGCCACCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTTAAGGAGTTGTGGGCTTTGTTCAATTTCTGCTGCCCTGAGTTACTTGGTGACAATAAATGGTTCAAAGAAAAATTTGAAGTACCCATACTTCGTGGAAATGACAAACATGCTACGGACAGAGATAAGCGTGTAGGATCTGCTATAGCAAAGGACTTAAGAGATCGTATTCAACCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAATCAAGATGATGACAAAACAACTGCAAAACTTTCCAAGAAAGAAGAGATTATTGTTTGGCTTCGATTGACTAGTATTCAGCGACATCTATATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCGCCACTTGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTATTGGAAGGAATGGACTCAATGCTAAAGCCAGAAGAAGTTAATGTTGCTGAAAAATTGGCGATGCACATAGCAGATGTTACAGACACAGATAGGTTCAAAAATGAGCATGGTCATGATGTATCATGCAAAATTTCTTTCATCATGTCATTATTGGATAATCTGATCCCAGAAGGGCATAGTGTCCTTATCTTTTCTCAGACTCGCAAAATGCTTAACATTATTCAGGAATGCCTAGCATCCAAAGGTTATGACTTTCTACGGATTGATGGAACAACAAAAGCCTGTGACAGATTAAGGATTGTTAATGAATTCCAAGCAGGTGCAAGTGCCCCTATATTTCTGTTGACATCTCAAGTAGGTGGTTTAGGACTCACACTCACAAGAGCAGATCGTGTTATTGTTGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTCGACCGTGCATATCGTATTGGTCAAAAGAAAGATGTTCTTGTTTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTATAGGAAGCAGGTATATAAAGGAGGATTATTCAGAACTGCTACTGAACAAAAAGAACAAACTCGCTACTTTAGTCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAGGGGTTTGATGTATCTGTTACCCAACGACAATTGGATGAGGAGCATGATGGTCAACATACATTGAATGACACTTTTAAAGCACATATAGAATTCCTGAGAAGTCAAGGTATAGCAGGAGTTAGCCACCATAGTTTACTCTTTTCCAAAACAGGACCAGTTCAAGCTGCTCCTGAAGATGATGATATGACGAGGAATCAAGGGACTAGATATATTGGTACTTCAGTATCGTCTTCTTCAAATGACCGAATGGCTGATGGAGCTGAGTTTGCCTTTAAACCCAAGGATTTAGATCGAAGCAAAAAGGGTTTTTCCCCTAGCAGCGATGGTAAAATGACAGAGTCGGAAATCAAAGATAGAATTAAGCGGATCTCTCAAACTCTGTCAAATACGGCGATGATTTCTAGATTACCGGATAAGGGGGCGAAACTACAGAAAAGGTTGACGGAGCTGAATTCGGAGCTTGCCAGATTAGGGATGGAAGAAAGAACTGGTGCTGATCTGGATGATTTCACCAGTGAGTTTCAAAGAGTGTTGAATGTATAG 3264 0.4301 QFHFLLKHPKPWTSESGWNASIDSFSSVTTPKPSGVMTCFGRFQPPDHDVFLAFNSKQQHELAFNGKLPRQLDSVAPGKSILSAWRSESTASAVLFQPKSDFFAQLPQFSQKNTWNEIKEKNTQTHTSPRTSDRAAPSPDSFFRAAHPPPAVQPPLSSSFSYVRSFLYGVSDDEKKTKLKLQGRRRLCKVATSDDRDKEAAVDESRFDELIELDSPLPAPKNVIQIDESVGKNDIRDILNELNSKFELLSVERKRETKQVKPIEGSSALFRGKETYEDDEVVEFGSAGSSFSPQKDPSNDPSQGAKYAVGDAGIEYVEDDDSPAKDAGGDGGIEYVQDDDSDDSVEELVNFEPKGDGSITLPGPKYTFKLPSKIAKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGYLAGLFHSRIIKRALVVAPKTLLPHWIKELSAVGLSEKTREYFGTNTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGSYHFDDEDNEDGATWDYMILDEGHLIKNPSTQRAKSLLEIPCSHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEVPILRGNDKHATDRDKRVGSAIAKDLRDRIQPYFLRRLKSEVFNQDDDKTTAKLSKKEEIIVWLRLTSIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHIADVTDTDRFKNEHGHDVSCKISFIMSLLDNLIPEGHSVLIFSQTRKMLNIIQECLASKGYDFLRIDGTTKACDRLRIVNEFQAGASAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFRTATEQKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEEHDGQHTLNDTFKAHIEFLRSQGIAGVSHHSLLFSKTGPVQAAPEDDDMTRNQGTRYIGTSVSSSSNDRMADGAEFAFKPKDLDRSKKGFSPSSDGKMTESEIKDRIKRISQTLSNTAMISRLPDKGAKLQKRLTELNSELARLGMEERTGADLDDFTSEFQRVLNV* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3706 1087 Pfam Helicase conserved C-terminal domain 737 849 IPR001650 -
Amo13g3706 1087 CDD SF2_C_SNF 732 860 - -
Amo13g3706 1087 PANTHER SNF2/RAD54 FAMILY MEMBER 357 972 - -
Amo13g3706 1087 MobiDBLite consensus disorder prediction 285 306 - -
Amo13g3706 1087 MobiDBLite consensus disorder prediction 318 342 - -
Amo13g3706 1087 Coils Coil 1047 1067 - -
Amo13g3706 1087 MobiDBLite consensus disorder prediction 121 150 - -
Amo13g3706 1087 Coils Coil 239 259 - -
Amo13g3706 1087 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 740 899 IPR001650 -
Amo13g3706 1087 MobiDBLite consensus disorder prediction 287 301 - -
Amo13g3706 1087 MobiDBLite consensus disorder prediction 1003 1022 - -
Amo13g3706 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 615 IPR027417 -
Amo13g3706 1087 SMART helicmild6 766 849 IPR001650 -
Amo13g3706 1087 Pfam SNF2-related domain 393 685 IPR000330 GO:0005524|GO:0140658
Amo13g3706 1087 SMART ultradead3 373 576 IPR014001 -
Amo13g3706 1087 PANTHER OS04G0692700 PROTEIN 357 972 - -
Amo13g3706 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 631 932 IPR027417 -
Amo13g3706 1087 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 390 565 IPR014001 -
Amo13g3706 1087 Gene3D - 637 935 IPR027417 -
Amo13g3706 1087 Gene3D - 363 636 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3706 Amo-Chr13 125240052 125250636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3706 378 903 RAD5 or RAD16-like Gene Family AT1G02670 24.826 8.27e-36 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo13g3706 SNF2_N 4.7e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3706 K20093 - gmx:100779283 1403.27