Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3685 ATGAAGAGTGAATTGGAATTACCACCTGGATTCAGGTTCCACCCCACTGATGAGGAGCTTGTGAATCACTACTTGTGCAAGAAATGTGCTTCACAGTCAATTGCTGTTCCTATCATCAAGGAGATCGATTTGTACAAGTTTGATCCATGGCACCTTCCAGAGATGGCTCTATACGGCGAGAAAGAGTGGTATTTCTTCTCTCCTAGGGACCGCAAATATCCGAACGGATCACGCCCAAACCGGGCTGCGGGTTCAGGGTACTGGAAGGCCACAGGTGCTGATAAGCCCATTGGAAAGCCCAAGGCCCTGGCCATCAAGAAGGCACTGGTGTTTTACGCGGGGAAAGCCCCCAAGGGAGTGAAAACCAATTGGATCATGCATGAATATAGACTCGCTAATGTTGACAGATCCGCAGGCAACAAGAAAAATAACTTAAGGGTATGTCGTGCTCTATGCACCTTAATTTCAATCTCACAACATTTTAGATTTGGTAAAAAATATAATGATTGGGAATTATTGCAGCTTGATGATTGGGTGCTATGCCGAATTTACAACAAGAAAGGAAAGATTGAGAAATACAACCATCTTGGAGCGGCGGATCACAAATCAGCATCGTCGGAGGAGGAGAATGAGAGGAAGCCGGAGGTGAAGGAGCGATTGCATATGGATACGTCGTCGGATTCGGTGGTATCGGCGGATGTGACGTGGGAGAGTAGGGAGGTGCAGAGCGAGCCAAAGTGGACTGACCTGCTTGACCAAGTCTTTGATTTCCAGTTAGGCAGTTTCGTTGATTTCTCATCGGCTGGAGATGACCCTTTTGCCCCCCAGCTCTCTCCTTGGCACCAGGACACGTTCATCACATTTTAA 867 0.4752 MKSELELPPGFRFHPTDEELVNHYLCKKCASQSIAVPIIKEIDLYKFDPWHLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALAIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGNKKNNLRVCRALCTLISISQHFRFGKKYNDWELLQLDDWVLCRIYNKKGKIEKYNHLGAADHKSASSEEENERKPEVKERLHMDTSSDSVVSADVTWESREVQSEPKWTDLLDQVFDFQLGSFVDFSSAGDDPFAPQLSPWHQDTFITF* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3685 288 Gene3D NAC domain 16 191 IPR036093 GO:0003677|GO:0006355
Amo13g3685 288 MobiDBLite consensus disorder prediction 199 225 - -
Amo13g3685 288 SUPERFAMILY NAC domain 4 151 IPR036093 GO:0003677|GO:0006355
Amo13g3685 288 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Amo13g3685 288 ProSiteProfiles NAC domain profile. 7 186 IPR003441 GO:0003677|GO:0006355
Amo13g3685 288 PANTHER NAC DOMAIN-CONTAINING PROTEIN 102 1 148 - -
Amo13g3685 288 PANTHER NAC DOMAIN-CONTAINING PROTEIN 102 167 259 - -
Amo13g3685 288 MobiDBLite consensus disorder prediction 199 224 - -
Amo13g3685 288 PANTHER NAC TRANSCRIPTION FACTOR 56 1 148 - -
Amo13g3685 288 PANTHER NAC TRANSCRIPTION FACTOR 56 167 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3685 Amo-Chr13 124891755 124893543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3685 1 288 NAC Transcription Factor Family AT5G08790 58.278 2.96e-109 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo13g3685 NAM 8.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3685 - - mtr:MTR_3g096920 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3685 13 124891755 124893543 Amo13g3685 13 124891755 124893543 ECH