Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3683 ATGGGCAAAGAAAATGGGTCAGCAACGCCAAAGGAAGAAGGCAGTGATGACGGTTACTCAAGTCTTGAGACTGTTGAATTAGAATCTCAGTCACGACCTAGCTTAGAGAAGGACACAGGTTTGCCAAGTTGTCGCGTGTGCCAATGTGCCGAATCTGATAAAAGGGGAGATGCTGCCCTAGAATTTTTGGGCATCACTCCGGTGATCAAAGCTTGTAAATGGAATGGGGAAGATGGGGAGGTAAGGTCAGAAGGCCAGGGAATTCAGAAAAATATGTCTTTTAACAAAAATGTTGGAAGCAAATCTGGGATGGTGGAATTTGTAGGCCCTAATGGGGAGGTTTTCATGTGTAGAAGTGATGTGGAGATTGGTTTGTCTCACCAAGATGCATTGATTGAACTTGGTTGCTGTTGTAAGAATGACCTTGCTTTAGTACACTATGCTTGTGCACTCAAGTGGTTTATTAATCATGGATCAACAATTTGTGAAATATGTGGACACATAGCCAATAATATCAGAATCTCTGACTTCAACAAGGTTGTTGGTTCTCTGAAGGAATATGAAGCCTTGAGGGAGAGAACTGTCAGTGGGGATCCTGGTCCTCATGTTCATGAGAATAATAATACTGGCGTTGATCCTGACGCTGTGGCTGCTATCCGGAGGCAGCGGCTAAGTGAGATTGCATTATGGTTTTGTCCTCATAATACCAGTAGTATAAATAACAATAGCAATGCCGACACAGTTTCACAGGTGGCTTCTGAGCAGCCTTCAAATTTTGTTACTGAAGATGCTGGCCTTGCACAGAGTCCTGCAACCAAGTGGGCCGTGGAAGGCACAGGGATCCTGCTTGCTACTGGCCTGCTTACAATCACCCTTGCGTGGCTGATAGCTCCCCGAGTTGGAAAGAAAACAGCCAAAAGTGGTCTTCACATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTTGTTTTTTTCCGCTTTTTATTGCAGTTTGTGCTTACCAGAATCAAGTACGGACCTGCACGTTATTGGGCAATCTTATTCGTTTTCTGGTTTCTTGTGTTTGCAATATGGGCTTCACGGACACATGGTGCCCATACAACGTGA 1107 0.4463 MGKENGSATPKEEGSDDGYSSLETVELESQSRPSLEKDTGLPSCRVCQCAESDKRGDAALEFLGITPVIKACKWNGEDGEVRSEGQGIQKNMSFNKNVGSKSGMVEFVGPNGEVFMCRSDVEIGLSHQDALIELGCCCKNDLALVHYACALKWFINHGSTICEICGHIANNIRISDFNKVVGSLKEYEALRERTVSGDPGPHVHENNNTGVDPDAVAAIRRQRLSEIALWFCPHNTSSINNNSNADTVSQVASEQPSNFVTEDAGLAQSPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFLLQFVLTRIKYGPARYWAILFVFWFLVFAIWASRTHGAHTT* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3683 368 Pfam RING-variant domain 131 165 IPR011016 GO:0008270
Amo13g3683 368 MobiDBLite consensus disorder prediction 22 37 - -
Amo13g3683 368 ProSiteProfiles Zinc finger RING-CH-type profile. 106 172 IPR011016 GO:0008270
Amo13g3683 368 MobiDBLite consensus disorder prediction 1 41 - -
Amo13g3683 368 SUPERFAMILY RING/U-box 128 168 - -
Amo13g3683 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 175 IPR013083 -
Amo13g3683 368 SMART ringv_2 117 166 IPR011016 GO:0008270
Amo13g3683 368 PANTHER ZINC FINGER, RING-CH-TYPE 16 367 - -
Amo13g3683 368 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 16 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3683 Amo-Chr13 124855352 124858601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3683 1 358 C3H Transcription Factor Family AT5G08750 62.842 3.20e-150 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3683 - - gmx:100805323 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3683 13 124855352 124858601 Amo13g3683 13 124855352 124858601 ECH