Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3663 ATGCCTCTTCTGAGGAGAAAGCCTTTTTCCTTGGCTGATCCACCTAAGGACTTGAAGCCAGACGAGCATGTTTATCAAATTCGATTTACAAAGGAAATATTTCGAGATTATAACGATTATTTGAACCGTATAAATCTATATCGCCAGAGGATTTGGATGTGTAAAGTAACTGGAAAAACCAACTTGACTTATGAAGAGGCTTTGGTGTCAGAAAAAAGTGCCTCTGAGAAAGTTCAACAGTTTCCAAAAGAATTAAGGGCTTCTGTGTTAAGGATTATTCAGTACAGTATGCTCCCTTTGAAGGATCTTGCTGATTTCATTGCTGAAAAATTGGAAGGACGTTTRTTTGTGGGTGCTGAACTGCATGGGAAGAAGGACAATGAYTTATACCCCTGCAGAATATTAAAAGTCATCCCYAAAGGAGTTGAKAAATTTTATTATGAGGTAGCTTGGCTTGACAAAGACAAGAATATAGGTGAAAAAGCAGAAGTCAATGCAAAAGATTTGGTACTAAAGAAACCATTATTCAGCAGAAATATGTTGAAGTCTTTTATCCGGGAATCGACATATAGGAATGCTCCTTGGGTTTTACATGAAGAAGTGGCAAAAAATCATGGAATCTCAACTGACATACCCGAGGAGTTAAGAGGAAGAGTTTGCTTCAAAAATGGACTTCTAACCTGCTCCAAGAAAAGAAAAACTGAGGAATCACTGGATGAAACTGAAAACTGTAAAAGGAAGAAGTTGGATGGGGCAGAATTTGATGGTTCTACTGAAGAGCAGCAAGAAAATGGTCAGCACAAGGTTGAGCGAATCAAATATCCAATTGATGATTTGTTAGTGAAGCCTAGTCCACATGATCCTGTTTTGGCTAATCGCCCTTCTCCATCAAGAGACTTCAATGTCCCCATGAACTGTGTAGGAAATCTCTTAATGGTTTGGGATTTTTGTACCACTTTTGGGAAAGTGTTGCACTTGTTGCCCTACTCTCTAGAAGATTTTGAAAATGCAATCTGCCACAAGGACAGCAARATTGTTCTCCTTGTGGAGTCACATGCAGCTCTTTTTCGGGTTCTTATACAAGATGATAGTGAATACACTGAAGCAGTGAAAAACCGAAGGACGAAGTCCAAGATTACAATGGTTAACTGGACAGAATATCTATGCCATTTTCTAGAAATGATCAATGTTCCTGAATTGCGGCAATGTGAAGCAACCATAAAACGGGGACATTATGGCCTTGTAGATATCAATGCTAAATTAGAAATCCTATATGAATTGGTCAATCGAGTGATTGAAACGACAATTTTTAGAGAGAAGTTGGGTGAGATTATTGAACAGKGGCATGTGCTTGGGGTGTCTAGGAGGGAAGAAGTGCTGGAAGATGCTAGGAAGAGAAGAAAAGAAAAAGAGATGTTGAAAGCTGAGATAGAGAGCAATGAAGTTGTGAATGGACATCACCTGAACAGTGAAAACGTCTCATCAAACAGTGATGATGATATACAGAATGGGCACATCGGAAAGAAAAGAAATGGAGAGATAGAATCATCTAGCGAAGACAATACAATTGGAAGTTTGATCAAACACTCYAATCCTGCTCCAAAGAACATGCCTAAGTCCAAGAAGCCAAATTCAGAGCCGAAACAACCAACAGAAAATGGAAAAGAATTACCAAAGCAATTTAAGAGTGATAAGGATTCACCAGAGAAGAATAGTAAAGAACAGAGGAAAGAATATTTTGAACGTGAGATGGAGAAACGGCCTATTCGTAGAAGCCCATTAGGTAAGGACAGAAATTATAATAGGTATTGGTGGTTTCGCCGTGATGGAAGGATATTTGTTGAAAACTCTGATTCGAAGGAGTGGGGATACTACAGCAGTAAGGAAGAGCTTGATGCATTTATGGGTTCACTGAACTGCAAGGGTGAGCGCGAAAGGGCACTGCGAAATCAACTGGAAAAATATTATAGTAGAGTATGTTCTGAACTCCAGAAAAGATCGAAGGATTTGATGCACAGGATTGCAGCGGATGAGTCTGTCCTTCGAAGGTCCACTCGAGTTCGAGCCCCTCCCAGGCAAAACCCTGCAAATGCTTTCCTCAATTATGTTAACAAGTGGAAAGTAGATTAG 2130 0.3953 MPLLRRKPFSLADPPKDLKPDEHVYQIRFTKEIFRDYNDYLNRINLYRQRIWMCKVTGKTNLTYEEALVSEKSASEKVQQFPKELRASVLRIIQYSMLPLKDLADFIAEKLEGRLFVGAELHGKKDNDLYPCRILKVIPKGVXKFYYEVAWLDKDKNIGEKAEVNAKDLVLKKPLFSRNMLKSFIRESTYRNAPWVLHEEVAKNHGISTDIPEELRGRVCFKNGLLTCSKKRKTEESLDETENCKRKKLDGAEFDGSTEEQQENGQHKVERIKYPIDDLLVKPSPHDPVLANRPSPSRDFNVPMNCVGNLLMVWDFCTTFGKVLHLLPYSLEDFENAICHKDSKIVLLVESHAALFRVLIQDDSEYTEAVKNRRTKSKITMVNWTEYLCHFLEMINVPELRQCEATIKRGHYGLVDINAKLEILYELVNRVIETTIFREKLGEIIEQXHVLGVSRREEVLEDARKRRKEKEMLKAEIESNEVVNGHHLNSENVSSNSDDDIQNGHIGKKRNGEIESSSEDNTIGSLIKHSNPAPKNMPKSKKPNSEPKQPTENGKELPKQFKSDKDSPEKNSKEQRKEYFEREMEKRPIRRSPLGKDRNYNRYWWFRRDGRIFVENSDSKEWGYYSSKEELDAFMGSLNCKGERERALRNQLEKYYSRVCSELQKRSKDLMHRIAADESVLRRSTRVRAPPRQNPANAFLNYVNKWKVD* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3663 709 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Amo13g3663 709 SMART testlast3 304 365 IPR018501 -
Amo13g3663 709 Pfam DDT domain 305 362 IPR018501 -
Amo13g3663 709 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 589 655 IPR028941 -
Amo13g3663 709 MobiDBLite consensus disorder prediction 541 581 - -
Amo13g3663 709 MobiDBLite consensus disorder prediction 483 501 - -
Amo13g3663 709 MobiDBLite consensus disorder prediction 477 581 - -
Amo13g3663 709 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Amo13g3663 709 MobiDBLite consensus disorder prediction 502 516 - -
Amo13g3663 709 Coils Coil 456 480 - -
Amo13g3663 709 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 707 - -
Amo13g3663 709 ProSiteProfiles DDT domain profile. 304 365 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3663 Amo-Chr13 124274136 124280030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3663 570 654 Homeobox Transcription Factor Family AT1G28420 38.298 1.92e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Amo13g3663 WAC_Acf1_DNA_bd 3.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3663 - - gmx:100789956 1002.66