Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3650 ATGGAGGAAGAATCCGTGGCGGACGAATGTTACCGGCCGTTGTCTGCTGAAGAAGAGGGAGGCGATGGAAGCGATGCCTTCGGCCCAGGTGGCGACGAATTCGGTGACGAATTTGAGGATGGGGAATTAGGGGTGGAGTCGGATGCAGAGGATAATTTCGGGGATAGCTTCTTTGACAAGTGGGAAGAGAGAGCAGTGGACAGCATTGCAGAGCTGGGGTGTATAAATTTCAAGGAAATAACTGCAAAGGAGATTTTAATGTGTCATTTTCTGGATCGATCGGTGGCATTCTTGTTTTACAGTTTGTATGCGAAGATGAATGGTTTCGCTGTGAGGAAGAATAAGATTTGGCGAAATGTGAGGAATGAGGGGTTCAGAGGAATGGGGTCCGTTAACGACGGCATGCAACGGAAACGTGAGCCAAAGGCGGAGACCAGATGCGGCTGTGAGGTAGAGATGTGCGTCCACGTGCACTTCGAAAGTGGTAGATGGATAATATCATACTTTCAAGACGTTCACAACCACAAGTTGCTGGACGATAGACTGACTTTCATGCTATCGGGCCATAGGAAAATGGATGCAGCCACCCTGGAACAAATGAACATGATGCCTAGAGTTGGGATTAAAACGCCACAGATTTATTCATCTTTTGTGCAGACTGCCAGGGGATTCCAAAACCTTTCGTTTCTAAAGAGGGATATGGACTTTGTTGAGCAGTTTATGCGTTGCATATCCCAAATGAGGTCCAGGGAAGCACACTCTGATCTGTTATCCATGGTTGGGGAACCAGTGCTACAGAGTCCATTTCATGATTTGGAGAGGTCAGCTGCAAAGAAGCTCACAAGGGCAATTTTCTTCAACTTCAGGCCGATGCTTTTCCGCGCTTGCACATTGAAGGTACGAACACACACATGGAGCCAGACTTCTGATACATTCACTTTGTCTAGGTCAGCTAATGCGCGTAGGGAGTGGCAAGTGTGTCACTATGGTGACAGTAACAGTTTCAAGTGCTCTTGCTTGCGAATGGAGTCCCTTGGTATACCGTGTGATCACATTGTAGCAGTGCTGGTACATTTGGAGATGACTGACATACCAGACAGTCTTGTTCTGGATCATTGGTCCAAGAGTGCTCGCTCGAAAGTAAGGGCCTTTGTGGAGAAAGGTCTGTTTTGCTGGGATATCTCTGCCAACATTTAA 1197 0.4737 MEEESVADECYRPLSAEEEGGDGSDAFGPGGDEFGDEFEDGELGVESDAEDNFGDSFFDKWEERAVDSIAELGCINFKEITAKEILMCHFLDRSVAFLFYSLYAKMNGFAVRKNKIWRNVRNEGFRGMGSVNDGMQRKREPKAETRCGCEVEMCVHVHFESGRWIISYFQDVHNHKLLDDRLTFMLSGHRKMDAATLEQMNMMPRVGIKTPQIYSSFVQTARGFQNLSFLKRDMDFVEQFMRCISQMRSREAHSDLLSMVGEPVLQSPFHDLERSAAKKLTRAIFFNFRPMLFRACTLKVRTHTWSQTSDTFTLSRSANARREWQVCHYGDSNSFKCSCLRMESLGIPCDHIVAVLVHLEMTDIPDSLVLDHWSKSARSKVRAFVEKGLFCWDISANI* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3650 398 Pfam FAR1 DNA-binding domain 99 178 IPR004330 -
Amo13g3650 398 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 90 178 IPR031052 GO:0006355
Amo13g3650 398 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 235 381 IPR031052 GO:0006355
Amo13g3650 398 MobiDBLite consensus disorder prediction 1 41 - -
Amo13g3650 398 PANTHER OS04G0354200 PROTEIN 90 178 - -
Amo13g3650 398 PANTHER OS04G0354200 PROTEIN 235 381 - -
Amo13g3650 398 Pfam SWIM zinc finger 336 359 IPR007527 GO:0008270
Amo13g3650 398 ProSiteProfiles Zinc finger SWIM-type profile. 312 360 IPR007527 GO:0008270
Amo13g3650 398 SMART 26again6 335 362 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3650 Amo-Chr13 123882859 123884839 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo13g3650 FAR1 1.1e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3650 - - adu:107493030 372.089