LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g3647	ATGGCCAGTGCAGGTACCCCTTTGCCGGTAGCATACCAAGCATGGACGAGTCCAGCAGTACCGGACTGGCTAAACAAAGGGGACAACGCATGGCAGATGGTGTCAGCCACCCTGGTGGGGATACAGAGCATGCCCGGATTAGTCATCTTGTACGGAAGCATAGTCAAGAAGAAATGGGCCGTCAACTCCGCCTTCATGGCCCTCTACGCATTCGCCGCGGTTGTCATATGCTGGGTCACTTGGGCCTACAAGATGTCCTTTGGGGACAAGCTCCTGCCCTTCTGGGGTAAAGCTGGGCCCGCCTTGGGCCAGAAGTTCCTCATCAAGCAGGCCGCGCTCCCCGCAACGCCTCATTACTACAACACGGGGGCTCTGGAGACGGCGGAAATTGAGCCATATTATCCCATGGCCACCATGGTGTGGTTTCAGTGCGTTTTCGCAGCCATCGCTGTGGTCATACTGGCCGGCTCGGTGCTGGCTAGGATGAACTTCAAGGCGTGGATGATGTTCGTGCCGTTATGGTTGACTTTCTCGTACACCATAGGCGCGTTCAGCTTGTGGGGTGGTGGCTTCTTGTTCCAGTGGGGTGTTATGGACTACTCTGGTGGTTACGTCATCCATCTTTCCTCCGGCGTTGCAGGCTTCACCGCCGCTTATTGGGTTGGGCCAAGGTCGAAGAAGGACAGGGAGAGGTTCCCACCAAACAACGTGCTGCTAACGCTGACAGGGGCGGGGCTGCTGTGGCTGGGGTGGGCAGGGTTCAACGGAGGGGACCCGTACTCGGCCAACATAGACTCATCGATGGCGGTGCTGAACACGAACGTGTGCGCCGCCACCAGCCTCTTAGTGTGGACGTGGCTTGATGTCATATTCTTCAACAAGCCCTCCGTTATTGGAGCCGTTCAGGGCATGATTACTGGCCTCGTTTGCATCACTCCCGCCGCAGGTCTGGTTCAAGGATGGGCAGCCATAGTTATGGGAGTTCTATCAGGAAGTGTGCCATGGTACACCATGATGGTATTGGGCAAGAAGCTCACAATCTTCCAAATAGTCGACGACACTCTCGCCGTCTTCCACACCCACGCCGTCGCCGGACTCCTGGGCGGCATCCTCACGGGGTTTCTCGCGGAGCCACGGCTGAGTTCCCTGTTTCTTGCGGTGACCAACTCTAGAGGAGCGGTGTACGGAGGGTCGGCTGGGGGAGTTCAAATCCTGAAGCAATTGGTTGGAGGATTGTTCGTCATTGGATGGAATTTGGTAGCCACCTCCATAATTTGTGTGGTGGTGAAGTTGGTGGTTCCTTTGAGAATGACGGATGAAGAGTTGCTGATTGGTGATGATGCAGTTCACGGAGAAGAAGCTTATGCCTTATGGGGTGACGGAGAGAAACTTAGCCTCTACAAAGATGACACCACCCAGCATGGAATGGCAATGGCTTCCAGTGGTGCCACTCAAGTTGTCTAG	1464	0.556	MASAGTPLPVAYQAWTSPAVPDWLNKGDNAWQMVSATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWVTWAYKMSFGDKLLPFWGKAGPALGQKFLIKQAALPATPHYYNTGALETAEIEPYYPMATMVWFQCVFAAIAVVILAGSVLARMNFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGVAGFTAAYWVGPRSKKDRERFPPNNVLLTLTGAGLLWLGWAGFNGGDPYSANIDSSMAVLNTNVCAATSLLVWTWLDVIFFNKPSVIGAVQGMITGLVCITPAAGLVQGWAAIVMGVLSGSVPWYTMMVLGKKLTIFQIVDDTLAVFHTHAVAGLLGGILTGFLAEPRLSSLFLAVTNSRGAVYGGSAGGVQILKQLVGGLFVIGWNLVATSIICVVVKLVVPLRMTDEELLIGDDAVHGEEAYALWGDGEKLSLYKDDTTQHGMAMASSGATQVV*	488

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g3647	487	Gene3D	Ammonium transporter AmtB like domains	9	458	IPR029020	-
	Amo13g3647	487	TIGRFAM	amt: ammonium transporter	28	455	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Amo13g3647	487	PANTHER	AMMONIUM TRANSPORTER	19	469	-	-
	Amo13g3647	487	SUPERFAMILY	Ammonium transporter	23	437	-	-
	Amo13g3647	487	Pfam	Ammonium Transporter Family	30	455	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Amo13g3647	487	ProSitePatterns	Ammonium transporters signature.	199	224	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Amo13g3647	487	PRINTS	Rhesus blood group protein signature	143	159	IPR002229	GO:0005887
	Amo13g3647	487	PRINTS	Rhesus blood group protein signature	238	256	IPR002229	GO:0005887
	Amo13g3647	487	PRINTS	Rhesus blood group protein signature	269	291	IPR002229	GO:0005887
	Amo13g3647	487	PRINTS	Rhesus blood group protein signature	362	378	IPR002229	GO:0005887
	Amo13g3647	487	PANTHER	AMMONIUM TRANSPORTER MEP2	19	469	IPR001905	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g3647	Amo-Chr13	123855912	123858464	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g3647	136	474	Inorganic Solute Cotransporters	AT2G38290	69.027	8.18e-164	466

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g3647	K03320		-	gmx:100785993	869.766