Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3644 ATGGAAAAGTACGAGGCCGTGAAGGATTTGGGAGCTGGGAATTTTGGGGTGGCTAGGCTCATGAGAAACAAGGAGACCAAGGAGCTCGTTGCCATGAAATACATAGAGCGTGGCCACAAGATTGATGAGAATGTGGCAAGAGAGATTATCAATCACAGATCCCTTCGGCATCCCAACATAATTCGCTTCAAGGAGGTAGTTTTGACCCCCACTCATTTAGCAATAGTGATGGAGTATGCAGCCGGAGGAGAGCTCTTTGAGAGAATATGCAACGCTGGAAGGTTTAGTGAAGATGAGGCTAGATATTTCTTTCAGCAACTGATTTCCGGTGTCCATTACTGTCATGCCATGCAAATATGCCACAGGGATTTGAAGCTAGAAAATACTCTTTTAGATGGAAGCCCTGCACCTCGCCTGAAAATTTGTGACTTTGGTTATTCCAAGTCATCATTGCTTCATTCAAGACCCAAATCAACTGTTGGAACTCCAGCTTATATCGCACCAGAGGTTCTTTCTAGGAGGGAGTATGATGGGAAGTTGGCTGATGTCTGGTCATGTGGAGTGACTCTTTATGTCATGCTAGTTGGAGCATATCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTGTTCAGTACAAAATCCCGGATTATGTTCACATCTCTCAAGATTGCAGACACCTTCTTTCACGCATATTTGTCGCTAACCCATTGAGGAGAATTTCTCTCAAGGAAATCAAGAGCCACCCATGGTTTTTAAAGAACTTACCAAGGGAGCTAACTGAATCAGCTCAAGCTGCCTACTACCAAAGAGGCAACCCAAGCTTTTCCGTTCAAAGCATAGATGAGATCATGAAAATCGTGGGAGAGGCAAGGGACCCTCCTCCGGTATCTAGGCCTGTCAAAGGTTTTGGGTGGGAAGGCGAAGAAGAAGAGGAAGTGGAAGAAGAGGTGGAGGAAGAGGAAGAGGAAGAAGATGAGTATGACAAGAGGGTCAAGGAGGTTCATGCAAGTGGAGAATTTCACATCAGTTAA 1059 0.4495 MEKYEAVKDLGAGNFGVARLMRNKETKELVAMKYIERGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRHLLSRIFVANPLRRISLKEIKSHPWFLKNLPRELTESAQAAYYQRGNPSFSVQSIDEIMKIVGEARDPPPVSRPVKGFGWEGEEEEEVEEEVEEEEEEEDEYDKRVKEVHASGEFHIS* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3644 352 MobiDBLite consensus disorder prediction 316 336 - -
Amo13g3644 352 SUPERFAMILY Protein kinase-like (PK-like) 2 289 IPR011009 -
Amo13g3644 352 Coils Coil 315 346 - -
Amo13g3644 352 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3644 352 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Amo13g3644 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Amo13g3644 352 MobiDBLite consensus disorder prediction 303 352 - -
Amo13g3644 352 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3644 352 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3644 352 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2H 2 345 - -
Amo13g3644 352 CDD STKc_SnRK2 3 259 - -
Amo13g3644 352 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Amo13g3644 352 MobiDBLite consensus disorder prediction 337 352 - -
Amo13g3644 352 PANTHER SERINE/THREONINE KINASE 2 345 - -
Amo13g3644 352 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3644 Amo-Chr13 123654313 123657248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3644 3 263 CBL-interacting serine-threonine protein kinases AT2G26980 42.279 7.99e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Amo13g3644 Pkinase 9.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3644 K14498 - gmx:547968 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3644 13 123654313 123657248 Amo13g3644 13 123654313 123657248 ECH
Amo13g3644 13 123654313 123657248 Amo08g2266 08 35753360 35756169 PCT
Amo08g2266 08 35753360 35756169 Amo13g3644 13 123654313 123657248 PCT