Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3636 ATGGGTAGATCTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGAGCTTGGACCAAAGAGGAAGATGAGCGCCTCATCAACTACATCAAGCTTCATGGCGAAGGCTGTTGGAGATCCCTTCCCAAAGCTGCAGGGTTGCTTAGGTGTGGGAAGAGTTGCAGGCTGAGATGGATAAATTACCTAAGGCCTGATCTCAAGAGAGGCAACTTCACTGACGAAGAAGACGAGCTCATCATCAACCTCCACAGCTTACTCGGTAACAAATGGTCTCTAATAGCAGCGAGGTTACCGGGAAGAACCGATAATGAGATAAAGAACTACTGGAACACCCACATAAAGCGTAAACTTTATAGCCGTGGAATTGACCCTCAAACCCATCAACCACTCAACGCTGCACCCGCACCTTCCACCAAAACAATAACCCCACCACCACCAACAACAACAGTTCCACCTACGGCCACAAACAACAACGACAACAGCATCAATTTTCGTCTATTTGGTGTTGCTTGTGCCAAGAATAATAATACTGATGGAACAGACTACTACTCATCAGGAGGGGGTGATGAAGATTCAAACAGCAGCAGTGGCGTCACAACGGAGTTAGAAGCATATCCTAAACTCAACTTGGACCTCTCCTTAGGCCTTCCCTCTCCTCTTTCTTCCATAATCCACACACAAAACCCAAAACGACACCGTCAACAACTACAAGCTGCTTATTCCTTTTGTGTGTGTCAAACTCTAGGGTTTCAAAAAAGTAATAACCAACCTTGTGCCTGCAAACCCAGCCTGGTGCTGCTACTGCAAGTGCTGGTGGTGCTTCGAATAATAGTAGTAATGATAATAATGTGTATAACAGATTTCAATTTACAAGCTAATTAA 879 0.4494 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHQPLNAAPAPSTKTITPPPPTTTVPPTATNNNDNSINFRLFGVACAKNNNTDGTDYYSSGGGDEDSNSSSGVTTELEAYPKLNLDLSLGLPSPLSSIIHTQNPKRHRQQLQAAYSFCVCQTLGFQKSNNQPCACKPSLVLLLQVLVVLRIIVVMIIMCITDFNLQAN* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3636 292 CDD SANT 69 112 IPR001005 -
Amo13g3636 292 CDD SANT 16 61 IPR001005 -
Amo13g3636 292 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 239 - -
Amo13g3636 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo13g3636 292 SMART sant 13 63 IPR001005 -
Amo13g3636 292 SMART sant 66 114 IPR001005 -
Amo13g3636 292 MobiDBLite consensus disorder prediction 123 154 - -
Amo13g3636 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo13g3636 292 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Amo13g3636 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo13g3636 292 Gene3D - 14 66 - -
Amo13g3636 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo13g3636 292 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Amo13g3636 292 Gene3D - 69 134 - -
Amo13g3636 292 PANTHER TRANSCRIPTION FACTOR MYB7 1 239 - -
Amo13g3636 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3636 Amo-Chr13 123499610 123501121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3636 1 223 MYB Transcription Factor Family AT4G09460 58.874 2.31e-91 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g3636 Myb_DNA-binding 4.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3636 K09422 - pvy:116145632 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3636 13 123499610 123501121 Amo13g3636 13 123499610 123501121 ECH
Amo13g3636 13 123499610 123501121 Amo03g2701 03 115612877 115614391 hybridization