Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3620 ATGTATGTTGTGTTGGGAGATAGAAAGATGGGCCCTGACGCATTCACGTCCACCCTGTTCAAGTGGGATCCGCGCACCATCCTCCCAACTTGTTCTTCCTCACTGATGGAGGGGACCGGGGGACTGGAGGAGCTGTTCCATGCATACGGGGTGAGGTACTACACGGCGGCGAAGGTGGCAGAGCTGGGGTTCACGGCGAGGACGCTGGTGGACATGAAAGAGGAGGAGCTGGAGCACATGATGAACAGCCTTTCCCAGATCTTCCGTTGGGATCTGCTGGTTGGCGAGCGCTATGGCATCAAAGCTGCCGTCCGAGCTGAGCGTAGACGCATCCAAGACCATCATCAACTTCGAATTGATTCTCTCTCTCAAGAAGGGGTGCAACAACATAAAGAGGCGGTGGGGAGCACGTGGGACGTCAGGAAGAGGATGAGAAGCAGAAGCAAGATGATGAGCGATGAGGAGGAAGAAGAAGAGGAGGAGGAGGAGAGACAGAGAGAGCACCCGTTCATAGTGACGGAGCCTGGGGAAGTGGCGCGTGGCAAGAAGAACGGCCTGGATTACCTATTCCATCTGTATGAGCAATGCCGTGATTTCTTGATCCAAGTGACAAACGAAGTGTTTAGGTTCGCCAAGAAGGCAGGAGCTCATTGCATAAACAAGCCAAAGATGAGACACTACGTTCACTGTTACGCGCTTCACTGCCTCGACAAAGACACCTCCAATCAACTCAGGAGGCAGTTCAAGGAGACAGGCCAGAACGTTGGTGCATGGAGGCAGGCCTGCTACAACCCTCTCGTTGCCATTGCTGCCCTCCACCACCACGACATTGATTCCATCTTTAACTCTCATCCTTGCCTTTCCATCTGGTACGTTCCCACGAAGCTTCGCCAGCTTTGTCACGCCCACAGGAACAATTCAGCTTCCACTTCCACTTCCACCTCCACCCATCATCATCTTCTCTTCTAG 969 0.5356 MYVVLGDRKMGPDAFTSTLFKWDPRTILPTCSSSLMEGTGGLEELFHAYGVRYYTAAKVAELGFTARTLVDMKEEELEHMMNSLSQIFRWDLLVGERYGIKAAVRAERRRIQDHHQLRIDSLSQEGVQQHKEAVGSTWDVRKRMRSRSKMMSDEEEEEEEEEERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVTNEVFRFAKKAGAHCINKPKMRHYVHCYALHCLDKDTSNQLRRQFKETGQNVGAWRQACYNPLVAIAALHHHDIDSIFNSHPCLSIWYVPTKLRQLCHAHRNNSASTSTSTSTHHHLLF* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3620 322 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 161 308 IPR035209 GO:0003677
Amo13g3620 322 Pfam Floricaula / Leafy protein SAM domain 39 115 IPR035079 -
Amo13g3620 322 PANTHER PROTEIN LEAFY 12 318 IPR002910 GO:0003677|GO:0006355
Amo13g3620 322 MobiDBLite consensus disorder prediction 145 168 - -
Amo13g3620 322 Gene3D Protein LEAFY 160 314 IPR038276 -
Amo13g3620 322 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3620 Amo-Chr13 122901298 122902471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3620 10 306 Orphan Transcription Factor Family AT5G61850 51.786 5.10e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Amo13g3620 C_LFY_FLO 3.7e-79 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3620 - - adu:107480074 592.423