Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3619 ATGTATGTGTATATAGCAATGCCAAGAAGACACTACAGAGGGGTTAGGCACCGGCCATGGGGGAAATGGGCCGCGGAGATTCGAGATCCGAAGAAGGCAGCAAGGGTTTGGCTTGGAACTTTCGAAACTGCCGAGGAAGCTGCACTTGCTTATGACGAAGCCGCTCTTAGATTCAAAGGAAGCAAAGCTAAGCTCAACTTTCCAGAAAGGGTTCATCTCACTCGTGAATTCGGTTACCTCACTAACCGTCCTCCAGAACCGGAAATTGGCAATAACAATGGTCAACAAGTACCTAGTACTACTACCACAATTTCTCATGCTTCAGCTTCACAATTTTCTGGCAGTAGTGAGAGTAACAACAACAATTTCAATTATGCTTTTCCTCATTTGTATGGGAATCATAAAAATATGTTTGTTTCTTCCTCTTTGTCTTCGTCTTCGTCTTCATCTTCTGGATTTTCTATGCAATTTGGAGGTTCTTCTTCTAAGTCTCCTCCTATGAATTAA 507 0.428 MYVYIAMPRRHYRGVRHRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDEAALRFKGSKAKLNFPERVHLTREFGYLTNRPPEPEIGNNNGQQVPSTTTTISHASASQFSGSSESNNNNFNYAFPHLYGNHKNMFVSSSLSSSSSSSSGFSMQFGGSSSKSPPMN* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3619 168 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Amo13g3619 168 MobiDBLite consensus disorder prediction 140 168 - -
Amo13g3619 168 MobiDBLite consensus disorder prediction 86 117 - -
Amo13g3619 168 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Amo13g3619 168 Gene3D AP2/ERF domain 10 70 IPR036955 GO:0003700|GO:0006355
Amo13g3619 168 MobiDBLite consensus disorder prediction 81 117 - -
Amo13g3619 168 PANTHER DNA-BINDING DOMAIN 9 162 IPR044808 GO:0003700|GO:0009873
Amo13g3619 168 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
Amo13g3619 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABR1 9 162 - -
Amo13g3619 168 SMART rav1_2 11 74 IPR001471 GO:0003700|GO:0006355
Amo13g3619 168 ProSiteProfiles AP2/ERF domain profile. 11 68 IPR001471 GO:0003700|GO:0006355
Amo13g3619 168 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Amo13g3619 168 PRINTS Ethylene responsive element binding protein signature 34 50 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3619 Amo-Chr13 122895989 122896778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3619 9 120 AP2-EREBP Transcription Factor Family AT5G13330 66.071 3.99e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo13g3619 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3619 - - gmx:100793410 142.124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3619 13 122895989 122896778 Amo03g2663 03 115065321 115067730 hybridization
Amo13g3619 13 122895989 122896778 Amo08g2361 08 37016804 37019067 PCT
Amo08g2361 08 37016804 37019067 Amo13g3619 13 122895989 122896778 PCT