Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3607 ATGCCTTCTCCAATGGTGGATCAGAGGGGAGTTTCTGCTTCATCTCACTTTTTTGATGACATTTCTTTTCGTTCTGAGAGGGATGCTGGAATACGGAAGTTCAAATCCATTCATGATCAATATCCACAAGGAAAAAATGGAATGATAGCATCCCCTGGAAGCAATTTGAATTCTTCATCTGTACTGGAAAGAAGTGCAAAATCTGGTTTGCCAATGTCATGCACCAGTCTATCTATTGAAAATGTGGAACAGCTAAAATTTGGTGGTGAAGGCATTTTTGATGCGCTGATGGTTTCCAAGGAATCATCACATTATCATCACAGATCAAGGTCTGATGTATGTATGCGCTCCGGACCGAACTCACCTGGTGTAATTGGGGACAAGTTTGTTTCCAGTGCAGCCACATGTGAAAGTACTCTATTCTCGAGCTCATTGTCTGATATGTTTTGCCAAAAGTTGAGGTTGTTCGGGAAAGATGCTTTATCTGATCAGCCCGATATTATTGATTCTGTTCCCGAGGAAGAGCCTTATAAATCTCTTGAAGAAATAGAGGCTGAAACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTCAATGATGAGTCAAGATATAACAATACTAATGCCAGAAAAAATGATGACTTGGAGGATTTTGACTTGTTTAGCAGTGGGGGAGGCATGGAGCTGGAAAGAGATGAACATCTGAATGCAGGATTAAGAACTAGTGCTCTGGAGGGAGATTCAGGTTTTGTTGGAGGTCCTAAAGGAAAATTTCCTTTTGTCACACAACCTTCTAGAACACTCTTTGTTCGAAACATTAATAGCAACGTAGACGACTCTGAGCTAAAGGCTCTCTTTGAGGTGCGTCTTTGTTTTCCTTTCATGTTAGATGTTATGTTAGGATTTTCAGGAAGCATTTCACAACAGTTATCATAA 948 0.404 MPSPMVDQRGVSASSHFFDDISFRSERDAGIRKFKSIHDQYPQGKNGMIASPGSNLNSSSVLERSAKSGLPMSCTSLSIENVEQLKFGGEGIFDALMVSKESSHYHHRSRSDVCMRSGPNSPGVIGDKFVSSAATCESTLFSSSLSDMFCQKLRLFGKDALSDQPDIIDSVPEEEPYKSLEEIEAETIGNLLPDEDDLFSGVNDESRYNNTNARKNDDLEDFDLFSSGGGMELERDEHLNAGLRTSALEGDSGFVGGPKGKFPFVTQPSRTLFVRNINSNVDDSELKALFEVRLCFPFMLDVMLGFSGSISQQLS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3607 315 SUPERFAMILY RNA-binding domain, RBD 231 291 IPR035979 GO:0003676
Amo13g3607 315 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 291 - -
Amo13g3607 315 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3607 Amo-Chr13 122623341 122626986 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3607 - - ccaj:109813669 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3607 13 122623341 122626986 Amo03g2655 03 114936754 114944738 hybridization
Amo13g3607 13 122623341 122626986 Amo08g2366 08 37058161 37065388 PCT
Amo08g2366 08 37058161 37065388 Amo13g3607 13 122623341 122626986 PCT