Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3575 ATGGGCTGCGCGCTCCCAAAGCCGGCGCGATCCCTACCAAATCCCGCTGCGCCTCCGGCCAGCAATGTTCGCGGCCACATTCCGACCCAACAGGGTTGGCCGCCGTGGTTGATGGAGGTTGTCGGCGACGCCATCCGAGACTGGACTCCTCGCCGCGCCAACACCTTCGAAAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTACAAAGCGAGAGACCTAGTGAGTGGAAAGATAGTGGCTTTGAAGAAGGTGAGATTTGATGACTTAGAAGGAGAGAGTGTGAAGTTCATGGCCAGAGAGATTCTTGTCCTGAAGAAGCTTGATCACCCGAATGTTGTGAAACTTGAAGGCTTGGTTACTTCAAGGATCTGTTCCAGTATCTACTTGGTGTTTGAGTACATGGACCATGATCTTGCTGGCCTTGTTGCTGGCCATGGTCTCAACTTCACTCAGCCTCAGATTAAATGCTATATGAAGCAATTACTATGTGGGCTTGAGCATTGCCACAGCAGAGGTGTATTACACCGTGATATAAAGGGTTCCAATCTGCTTATTGACAATCAAGGAATCCTTAAAATTGCTGATTTTGGACTCGCCGCTTTCTATGATTCCAAACAAACCCGTCCCATGACCAACCGAGTCGTCACTCTTTGGTATCGTCCGCCGGAGCTTCTTCTTGGAGCTACCTTCTATGGTGTTGGTATCGACCTCTGGAGTGCCGGATGCATCTTTGCGGAGCTACTTGCCGGAAAGCCTATCATGCCTGCCCGAACAGAGGTTGAGCAACTGCACAAAATATTCAAGTTATGCGGCTCTCCATCAGAGGATTACTGGAAGAAATATAGATTGCAAAATGCTACACTCTATAAGCCACACCACCAATATAAAAGATGCATCCTGCAAACTTTCAAGGATTTCCCATCTTCTTCATTACCTCTAATTGATACTCTTCTTGCAATAGATCCCGATCATCGCGGCACTACCTCTGCAGCTCTAAATAGTCAATTCTTTAACACCGAGCCCTATGCTTGTGAACCATCATGTTTACCAATGTATCCTCCTTGCAAAGAACTCGATAAAGCTTTAAGCGGAAAAGCTGTTGCAGTTGATGCTGCAACAAGAGTTAGAGCGCTTGAGTGCGCTTTGGCCATTCCAGAGATCCAAACAAATTTAGATAGGTGGAGAGTTGTGACAAATGCAAATGCCAAAAGCAAGAGTGAGAAATTCCCACCTCCACATCAGGATGGAGCTGTTGGATATCCATTGAATGCATCAAACAGAGGAACTGTTTTATTTTGTGCCAGTGACACTTCCTTTGGCTCAAAAACTTCAAGAACTCTTGGAACTAGTATTGCTGCTGCTGCTGCTAGGCCTAGGCCTAATTCCAAAGGAAGGACATCAAACAAAGCAGATTCGAAGATGGTGTCATCTTGGAAATTTATGCGTGCATTCAAGCCAACAATTGTTGGCCTTTCATCTGATTTATTATTTAGAAGGAATTAA 1512 0.4597 MGCALPKPARSLPNPAAPPASNVRGHIPTQQGWPPWLMEVVGDAIRDWTPRRANTFEKLAKIGQGTYSNVYKARDLVSGKIVALKKVRFDDLEGESVKFMAREILVLKKLDHPNVVKLEGLVTSRICSSIYLVFEYMDHDLAGLVAGHGLNFTQPQIKCYMKQLLCGLEHCHSRGVLHRDIKGSNLLIDNQGILKIADFGLAAFYDSKQTRPMTNRVVTLWYRPPELLLGATFYGVGIDLWSAGCIFAELLAGKPIMPARTEVEQLHKIFKLCGSPSEDYWKKYRLQNATLYKPHHQYKRCILQTFKDFPSSSLPLIDTLLAIDPDHRGTTSAALNSQFFNTEPYACEPSCLPMYPPCKELDKALSGKAVAVDAATRVRALECALAIPEIQTNLDRWRVVTNANAKSKSEKFPPPHQDGAVGYPLNASNRGTVLFCASDTSFGSKTSRTLGTSIAAAAARPRPNSKGRTSNKADSKMVSSWKFMRAFKPTIVGLSSDLLFRRN* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3575 503 CDD STKc_CDK9_like 56 340 - -
Amo13g3575 503 ProSiteProfiles Protein kinase domain profile. 56 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3575 503 Gene3D Phosphorylase Kinase; domain 1 42 138 - -
Amo13g3575 503 Pfam Protein kinase domain 56 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3575 503 SMART serkin_6 56 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3575 503 MobiDBLite consensus disorder prediction 1 28 - -
Amo13g3575 503 Gene3D Transferase(Phosphotransferase) domain 1 139 376 - -
Amo13g3575 503 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Amo13g3575 503 SUPERFAMILY Protein kinase-like (PK-like) 49 345 IPR011009 -
Amo13g3575 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Amo13g3575 503 PANTHER CELL DIVISION PROTEIN KINASE 31 446 - -
Amo13g3575 503 PANTHER OS01G0367700 PROTEIN 31 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3575 Amo-Chr13 121396176 121398367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3575 48 361 Core Cell Cycle Gene Families AT5G10270 51.818 7.81e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo13g3575 Pkinase 2.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3575 K08819 - gmx:100789359 733.406