Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3550 ATGGATTGGAATTTGAAAGCACCACCGTCTTGGGATTTGACAGAAGTGGATGAGGCAACCTTACCAAACATAGAAACAGTGGATGGCTCAACCAGATTTGGTGTTTACAGAACAAAAGGAGGGGAATTCTCTGTTGACTTGAAACTTGGCCAGGTTGGGAATTCTGCAACCGAACCAGTGTTGGTGACTAATTCAAATAAGTCCAACAAAGATGCTGTTGCTGCTGGTGTTGGTGTTGGTGTTGGTGTTGGGGTGTCCAACTCCAAAATGGTAATGCAATCACCTTCCTCAGGGTCATCAAAGAGAGCTAGAGCCATTAACAATGGGACACAGACAGTGTCATGCCTCGTTGATGGGTGCAATTCAGATCTCAGCACTTGCAGAGACTATCACAGGCGCCATAAGGTCTGTGAACTCCATTCCAAGACTCCTCAGGTCACAATTGCTGGCCACAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCACTGGAGGAGTTTGATGAAGGAAAGAGAAGCTGCAGAAAACGCTTAGATGGACACAACCGAAGGAGGAGAAAGCCACAACCAGAACCAATCACAAGAGGTGGTAGTTTTTTGTCCAGTTTCCAAGGCAGCCAGTTGCTACCCTTCTCAGGTTCGCATGTGTTCCCCTCATCTGGCGTGGTGAATGCTGGGTGGAGTGCAGGACTTGTTACATCCTGCGGAGATGTCAGGCTCCACAGCCACAGCAGCCAGCAACAGCAACAGATGCACATGGTTGATAAACAAGACCTGTTCCTTGGATCCTCACCAACACCCTACAATAACAACAAAGAAGGGAAGCAACAACTTGCATTCTTACAAGTTGATAACCATCACCACCATCATGCTGGTGCTGCTTCTTCCATGTGCCTGAGGAACATGTTCTGTGATAACACCCTAACAAGCTCGGTTCATGACTCTTCCTGTGCTCTCTCTCTTCTGTCATCACCACAGACAACACACAATCCTGGGAATGGATTGAACCAATTGGTGCCGCAGCCTCACACTCATCATACTCATCACTCTTCCCTGATGCAACAATCCTTAGGCCTCAGCCTCCACGATAGCAGCAGCATGGAGTCGGTGGACCCGGTTATGGGCCACAGTGAGACTGAACATTGTTCCTCAATGTATAATATGGATTCTCATGGATCCCATGGGAGTGATCCCCCTCAACTATTCCCCTTTCAGTGGGAATAA 1227 0.4784 MDWNLKAPPSWDLTEVDEATLPNIETVDGSTRFGVYRTKGGEFSVDLKLGQVGNSATEPVLVTNSNKSNKDAVAAGVGVGVGVGVSNSKMVMQSPSSGSSKRARAINNGTQTVSCLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTIAGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPITRGGSFLSSFQGSQLLPFSGSHVFPSSGVVNAGWSAGLVTSCGDVRLHSHSSQQQQQMHMVDKQDLFLGSSPTPYNNNKEGKQQLAFLQVDNHHHHHAGAASSMCLRNMFCDNTLTSSVHDSSCALSLLSSPQTTHNPGNGLNQLVPQPHTHHTHHSSLMQQSLGLSLHDSSSMESVDPVMGHSETEHCSSMYNMDSHGSHGSDPPQLFPFQWE* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3550 408 MobiDBLite consensus disorder prediction 179 199 - -
Amo13g3550 408 ProSiteProfiles Zinc finger SBP-type profile. 112 189 IPR004333 GO:0003677
Amo13g3550 408 SUPERFAMILY SBT domain 113 194 IPR036893 GO:0003677|GO:0005634
Amo13g3550 408 Gene3D - 106 176 IPR036893 GO:0003677|GO:0005634
Amo13g3550 408 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 408 IPR044817 GO:0003677
Amo13g3550 408 Pfam SBP domain 115 188 IPR004333 GO:0003677
Amo13g3550 408 MobiDBLite consensus disorder prediction 326 357 - -
Amo13g3550 408 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 11 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3550 Amo-Chr13 120371270 120374811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3550 1 408 SBP-box Gene Family AT5G50670 40.749 6.10e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo13g3550 SBP 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3550 - - ahf:112790946 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3550 13 120371270 120374811 Amo03g2539 03 110707362 110709925 hybridization