Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3532 ATGTGGCGGTCGGCGATTTCAGAACGACGAAGGGCATTCTCGAAGCTTCTATTCGCCTTCACAGTGTCCCGCAACATGGGCGGCGGCCCTCGAACCTTCCCCGGCGGCGTCAACAAGTGGAAGTGGAAGCGCATGCACGAGAAGCGCGCCCGTGACAAAGAGAAGAGACTTCTCGAACATGAGAAACAGCTCTATCAGGCTCGCATTCGCTCCCACATACGCTCACACCTCGCACCCGACAACTCAACCGCCACCGCCGCCACCACCCACGGCCCTATCTCCCCCACTGACCACATTAGGGCCCTCGCCAACCGCTTCATGAAGGAAGGAGCTGAAGATCTCTGGAACAACGACGACGGTCCCCTAACCGCTTCTTCTTCTTCTTGTTCTTCTCCCACGCGGCAGCAAGGTTCGATTGAGGCGCCGGTGGATTTGCGGAAGCTGATACAAGAGAAACGGAACCCCAATTCAATGAATTCGAGTGGGAATTTCGGTCAGAGGAGGGGTTACCATTCTGTTTCTGAGGTGAATTCCGGTGTTGGTAGCAGTAAGAAACTTGCGCCTGCTGGGAGGAGAAGATTTTGGAGGAACGATAGTTCTTCTTCGAGTGAGAGTGAATCCGAGGATGAGAACGATTCGAGGGTTAATAATTGGGATGTTAGGAAGATGGGTAGTAGTGCTTCTTTGAGGAAGCATGATTTGAAGAGGGAGAGGAGAGTGATGCCAAAACCATATGATGAAGAGGCTGATTTTGCAGAACAGGTTGAGCTGATTAAGTATGAGATTAACAAGAGGAAGTTGAAACAGAAGGAAATGGAAGAGTACAGGGTTGAGGACCAAGAATCCATCCTAACCCAATCAAGATTTGATGAGTGCGGTATATCGCCATTGACAGTCAAGGCTCTCTCTTCAGCTGGTTATATCCACCTGACCCGGGTGCAAGAGGCAAGCCTTTCTGTTTGCCTTGAGGGTAAGGATGCTCTGGTCAAAGCTAAAACTGGCACGGGAAAAAGTGCAGCATTTTTGCTTCCTGCCATTGAAACAGTTTTGAAAGCTATGAATAGCAAGTCGCGTCAAAATGTGCCACCTATATTTGTTCTTATTCTCTGCCCTACCAGAGAACTTGCCAGTCAAATTGCTGCTGAAGCAAAGGCTTTGCTCAAGTATCAAGATGGCATTGGTGTACAAACTCTCGTAGGAGGGGTGCGATTTAAAGTTGACCAAAAGCGTCTTGAATCCGATCCATGCCAGATACTTGTTGCTACCCCTGGTAGGTTGCTAGATCATATTGAGAATAAGTCTGGACTATCTGTGCGATTGATGAGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTTGGATTTCGAAAGGACGTAGAAAAGATTGTTGACTGTGTGCCTCGTCAAAGGCAATCCTTGATGTTTTCTGCAACCATCCCAAAGGAGGTTAGGTCCGCCGTGTATCTCAACTTGTTTTGA 1491 0.4876 MWRSAISERRRAFSKLLFAFTVSRNMGGGPRTFPGGVNKWKWKRMHEKRARDKEKRLLEHEKQLYQARIRSHIRSHLAPDNSTATAATTHGPISPTDHIRALANRFMKEGAEDLWNNDDGPLTASSSSCSSPTRQQGSIEAPVDLRKLIQEKRNPNSMNSSGNFGQRRGYHSVSEVNSGVGSSKKLAPAGRRRFWRNDSSSSSESESEDENDSRVNNWDVRKMGSSASLRKHDLKRERRVMPKPYDEEADFAEQVELIKYEINKRKLKQKEMEEYRVEDQESILTQSRFDECGISPLTVKALSSAGYIHLTRVQEASLSVCLEGKDALVKAKTGTGKSAAFLLPAIETVLKAMNSKSRQNVPPIFVLILCPTRELASQIAAEAKALLKYQDGIGVQTLVGGVRFKVDQKRLESDPCQILVATPGRLLDHIENKSGLSVRLMSLQMLVLDEADHLLDLGFRKDVEKIVDCVPRQRQSLMFSATIPKEVRSAVYLNLF* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3532 496 Pfam DEAD/DEAH box helicase 311 488 IPR011545 GO:0003676|GO:0005524
Amo13g3532 496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 318 496 IPR014001 -
Amo13g3532 496 MobiDBLite consensus disorder prediction 152 181 - -
Amo13g3532 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 491 IPR027417 -
Amo13g3532 496 MobiDBLite consensus disorder prediction 197 217 - -
Amo13g3532 496 MobiDBLite consensus disorder prediction 119 138 - -
Amo13g3532 496 MobiDBLite consensus disorder prediction 112 220 - -
Amo13g3532 496 Coils Coil 43 63 - -
Amo13g3532 496 PANTHER RNA HELICASE 29 489 - -
Amo13g3532 496 Gene3D - 253 495 IPR027417 -
Amo13g3532 496 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 287 315 IPR014014 GO:0003724
Amo13g3532 496 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 29 489 - -
Amo13g3532 496 SMART ultradead3 306 496 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3532 Amo-Chr13 119828752 119830749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3532 287 488 Eukaryotic Initiation Factors Gene Family AT5G11200 32.512 1.01e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3532 - - lang:109349967 685.641