Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3518 ATGAATCTATACACTTCATTTCTGTTTCTGGGTTTAATTTCCACGCTGTCTTTTGTAGCTTCTGATGCGGTGGCAAAAAATGAAGTTTCGGCGCTTCAAACCTTCAGAGAAGCTATCTTTGATGATCCACATCTTGTTTTGTCCAATTGGAATACCCTGGTTTCGGATCCTTGTGAGTGGAATGGTGTTTTGTGCAATGGACCTCGAGATCATGTCATCAAGCTAAACATATCAGGGTCAGCATTAAGAGGGTTTCTTGCACCAGAATTGGGGCAAATCACCTACTTGCAAGAACTAATCTTGCACGGAAACAATCTTATTGGAACAATACCAAAAGAATTGGGCATGTTGAAATCTCTCAAGGTGTTGGACTTGGGGTTGAATCAGTTATCAGGACCGATTCCTCGAGAAATTGGAAATTTGACCCAAGCAGTGAAAATAAACCTGCAGTCCAATGGGTTGACTGGTAGGCTACCCCCAGAGCTTGGAAATTTGAAATACCTTCAAGAACTTCGGTTGGATAGGAATAAGCTTCAAGGACCTGTTCCTGCTGGTGGAAGTTCTGATTCAACTATGCATGAGATGTATGCCTCAAATGTGAATTTAACTGGCTTGTGTCGTACGTCTCAATTAAAAGTTGCAGATTTTTCATATAACTTCTTTGTTGGGAGCTTACCCAAATGTTTGCGTGTCCCAAGATCAAGCTTTCAAGGGAATTGCCTTCAGATTAAAGACATAAAGCAGCGGACTTCTGTACAATGTGCTGGTGCTTCACCTGCCCAGAGCCATCCAGTAATGAACCTAAAGCATCGAGCTGCTGAACATGTGTCGAAGCATCAAAGAGCATCAAAACCTTCCTGGCTTTTGGCTCTAGAGATAGTGACGGGAGTCATGGTTGGTTGTCTCTTTTTGATTGCTATTTTCACGGCGTATCAGAGGTTTAACAGCAAATCATCTATCATCATTCCTTGGAAAAAATCTTCAAGCGAGAAAGAGCATATGACAGTATATATAGAATCTGATGTGTTGAAAGATGTGACGAAGTATAGCAGACAAGATCTTGAAGTGGCCTGCGAAGACTTCAGCAACATAATTGGTTCTTCACCAGATAGTGTGGTCTACAAGGGTACAATGAAAGGTGGACCTGAGATTGCTGTAATTTCCCTCTGCATTAAGGAAGAGCATTGGACGGGTTACCTTGAGCTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTGAATCATGAGAATACAGGAAAACTGCTAGGTTATTGTAGAGAGAGCAATCCTTTTACCAGGATGCTGGTTTTTGATTATGCTTCAAATGGGACACTCTATGAGCACCTACATTGCTATGAAGAAGGGTGCCAATTGTCATGGACACGGCGTATGAAAGTTATTATAGGCATTGCTCGTGGACTCAAGTATTTGCACACGGAAATTGAACCACCATTCACTATCTCAGAGTTGAATTCCAATGCTGTATATCTTACAGAAGACTTTTCACCAAAGCTGGTCGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAGAAGAATTCTGGTTCTATTGGCAGCCAGGGCTCCATGTGCCTTCTTTCAAATTCCGTGGAGGCACGTCGTCTTGACACCAAAGGAAACATATACGGCTTTGCAGTACTTCTATTGGAAATAATCAGCGGACGACCTCCATATTGCAAGGACAAAGGGTACTTGGTGGACTGGGCTAGGGAATATCTTGAGATACCGGAAATGATGTCAAGTGTGGTGGATCCAGAGTTAAAACATTACAGAGAAGACGACTTGAAAGTAATATGTGAGGTGGTATCGCAATGCATCAATGGCGACCCCAATGGCCGTCCGTCAATGCGGGAATTATGTAGCATTCTGGAGGGCAGAATTGACACTTCAATTAGCGTGGATCTCAAGGGATCATCTTTGGCTTGGGCTGAACTTGCCCTTTCATCTTAG 1977 0.4269 MNLYTSFLFLGLISTLSFVASDAVAKNEVSALQTFREAIFDDPHLVLSNWNTLVSDPCEWNGVLCNGPRDHVIKLNISGSALRGFLAPELGQITYLQELILHGNNLIGTIPKELGMLKSLKVLDLGLNQLSGPIPREIGNLTQAVKINLQSNGLTGRLPPELGNLKYLQELRLDRNKLQGPVPAGGSSDSTMHEMYASNVNLTGLCRTSQLKVADFSYNFFVGSLPKCLRVPRSSFQGNCLQIKDIKQRTSVQCAGASPAQSHPVMNLKHRAAEHVSKHQRASKPSWLLALEIVTGVMVGCLFLIAIFTAYQRFNSKSSIIIPWKKSSSEKEHMTVYIESDVLKDVTKYSRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEEHWTGYLELYFQREVADLARLNHENTGKLLGYCRESNPFTRMLVFDYASNGTLYEHLHCYEEGCQLSWTRRMKVIIGIARGLKYLHTEIEPPFTISELNSNAVYLTEDFSPKLVDFESWKTILERSEKNSGSIGSQGSMCLLSNSVEARRLDTKGNIYGFAVLLLEIISGRPPYCKDKGYLVDWAREYLEIPEMMSSVVDPELKHYREDDLKVICEVVSQCINGDPNGRPSMRELCSILEGRIDTSISVDLKGSSLAWAELALSS* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3518 658 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Amo13g3518 658 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 658 - -
Amo13g3518 658 Gene3D Transferase(Phosphotransferase) domain 1 441 644 - -
Amo13g3518 658 ProSiteProfiles Protein kinase domain profile. 359 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3518 658 Gene3D Ribonuclease Inhibitor 27 141 IPR032675 -
Amo13g3518 658 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Amo13g3518 658 Gene3D Ribonuclease Inhibitor 142 270 IPR032675 -
Amo13g3518 658 Gene3D Phosphorylase Kinase; domain 1 321 440 - -
Amo13g3518 658 PANTHER PROTEIN MALE DISCOVERER 2 6 658 - -
Amo13g3518 658 Pfam Protein tyrosine and serine/threonine kinase 363 631 IPR001245 GO:0004672|GO:0006468
Amo13g3518 658 SUPERFAMILY L domain-like 27 231 - -
Amo13g3518 658 SUPERFAMILY Protein kinase-like (PK-like) 340 633 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3518 Amo-Chr13 119384365 119388714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3518 42 637 Receptor kinase-like Gene Family AT5G45780 27.796 3.47e-53 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Amo13g3518 PK_Tyr_Ser-Thr 1.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3518 - - gmx:100779744 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3518 13 119384365 119388714 Amo13g3518 13 119384365 119388714 ECH
Amo05g2460 05 52168259 52171694 Amo13g3518 13 119384365 119388714 PCT