Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3475 ATGTTGACGGAGAACTTCAAAGAACAGCTTGCTTTGTCTGTGAGAAGCATCCAGTGGAGCTATGCAATATTCTGGTCTACTTCATCTACCCAACCCGGGGTGTTGAGTTGGGGGGAAGGATATTACAATGGAGACATTAAGACAAGGAAGACAAGTCAAGGAGTGGAACTCAATTCTGATCAGATAGGGTTGCAGCGGAGTGAGCAGCTTCGAGAGTTATACAAGTCCCTCAAAACTGTAGAAGCCAGCCCTCAAACCAAAAGGCCTTCAGCAGCACTGTCTCCGGAGGATCTCACAGATACAGAATGGTACTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAAGGCTCTTGCAAAAGGTGAACCAATTTGGCTGTGTGATGCTCCTTCTAGTGATTGTAGAGATTTTAGTCGCTGTCTTCTGGCTAAGACAGTGGTGTGCTTTCCTTTTATGGATGGGGTCATTGAGCTGGGTACAACTGATTATGTCTCAGAAGATCTCAGTCTCATTCAACAGATCAGAACTTCCTTGGATATTCTTGATGTCGGTGTTCATAATGTACATGGAGCATTTAATGCGAAACAATCTCAAGAAGTAGGAGGTGCATTAATCAGCATAACTTCTCCTAATAACAGTTCAAATGCATTTCAAGCCAATCAACCACCAGATGAAACATTCATGGTTGAAAGGATAAATAATGGCACCTCTCAAGTCCAAAGTTGGCAAATTATGGATGATGAATTGAGCAATGCTGTTCATAATTCTAGTGACTGCGTATCTCAAACTCTTCACAGTCCTGAGAACGTTGCTTCTCTTCCAAAGGGTGAAAACCTCACTGATAGTGCCAAAGACCTTCAAAAGTGCAATAACTCAAAAATGACATTAGTTGATCCTCGAAGCGATGATTGGCATTATCAGATGGTTCTTTCTACCCTTCTAAAAAGCTCAGACCAGTTAATCATGGGGATGCATTTTCAAAATTTTCATCAGGAATCAAGCTTTACAAGTTGGAAGAAAGCTGGGTCAGTGAGCTACCAAAGGCCAAGAACTGGAGGAAGCTCACAAGCTTTATTGAAGAAGGTATTGTTTGAAGTTCCTCGGATGCACTTGGATGGGATACTTGAGTATCAAGAAGAGAATGACTTTAAGGAAGCAGTGAGAACAGAAGCTGATGAAAATGGCATGAACCATGTTTTGTCAGAGAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAATTACTAAGGATGACAAAGTTTCGATACTAGATGATGCAATAGAATACCTTAGAAAGCTTGAAAAAAGGATAAAAGAGTTGGAAGCTCATAAGGATCTAACAGACAGAGAGGCTAGAACTAAAAGATCACCTCAAGATATGGTGGAGAGGACTTCTGATAATTATTTTAACAAAACGGATAACGGCAATAAATCGATGGCGAAAAAGAGGAAGTCTCGGGACATAGATGACACAAGGCCAGAGATTAATTCAGAATCTTTACTAAAAGGAAGTTCTACTAATGATGTTGCTGTTAACATCAATGAGAATAATGAAGTTGTGATTGAAATGAAATGCCCTTCAAGAGCAGGAATGTTTCTAAAAATTATGGAAGCAGTTAGCAGTCTCAGATTGAATTTTCATTCAGTTCAGTCCAGCGAAGTTGATGGGAATCTTTATTTTACCCTTAAATCTAAGCTCACAGGGCCAACTATTGTATCAGCAAAAAGGATCAAACAAACACTACAAAATGTGGCTTTCAAGTGTTGA 1812 0.4007 MLTENFKEQLALSVRSIQWSYAIFWSTSSTQPGVLSWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELYKSLKTVEASPQTKRPSAALSPEDLTDTEWYYLVCMSFVFNIGQGLPGKALAKGEPIWLCDAPSSDCRDFSRCLLAKTVVCFPFMDGVIELGTTDYVSEDLSLIQQIRTSLDILDVGVHNVHGAFNAKQSQEVGGALISITSPNNSSNAFQANQPPDETFMVERINNGTSQVQSWQIMDDELSNAVHNSSDCVSQTLHSPENVASLPKGENLTDSAKDLQKCNNSKMTLVDPRSDDWHYQMVLSTLLKSSDQLIMGMHFQNFHQESSFTSWKKAGSVSYQRPRTGGSSQALLKKVLFEVPRMHLDGILEYQEENDFKEAVRTEADENGMNHVLSERRRRAKLNERFLTLRSMVPSITKDDKVSILDDAIEYLRKLEKRIKELEAHKDLTDREARTKRSPQDMVERTSDNYFNKTDNGNKSMAKKRKSRDIDDTRPEINSESLLKGSSTNDVAVNINENNEVVIEMKCPSRAGMFLKIMEAVSSLRLNFHSVQSSEVDGNLYFTLKSKLTGPTIVSAKRIKQTLQNVAFKC* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3475 603 MobiDBLite consensus disorder prediction 491 511 - -
Amo13g3475 603 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 182 IPR025610 -
Amo13g3475 603 Coils Coil 438 465 - -
Amo13g3475 603 PANTHER TRANSCRIPTION FACTOR EGL1 5 599 - -
Amo13g3475 603 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 402 465 IPR036638 GO:0046983
Amo13g3475 603 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 399 448 IPR011598 GO:0046983
Amo13g3475 603 SMART finulus 405 454 IPR011598 GO:0046983
Amo13g3475 603 MobiDBLite consensus disorder prediction 463 516 - -
Amo13g3475 603 PANTHER TRANSCRIPTION FACTOR TT8 5 599 - -
Amo13g3475 603 Pfam Helix-loop-helix DNA-binding domain 403 449 IPR011598 GO:0046983
Amo13g3475 603 Gene3D - 391 466 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3475 Amo-Chr13 117485631 117489297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3475 4 603 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 46.914 5.84e-176 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo13g3475 bHLH-MYC_N 1e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3475 - - ahf:112732736 1152.5