Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3472 ATGATGGATGGTGATGATGAGTATATTCAAGCATCTAAAGGGAAGAATGTTGAAAGTTTCACATGTTCAGAAGTAGCACTACCACAGAACAAAAATGCTAAGAAGAAAAAGAGTAAGATAGAGAACAAGAGAAGATTCAGTGATGAGCAAATTAGATCACTTGAGTGCATATTTGAGTCAGAGTCCAAGCTTGAGCCAAGGAAGAAGATTCAGCTAGCAAGAGATCTTGGATTGCAGCCAAGGCAAGTTGCTATATGGTTTCAGAACAGAAGGGCAAGGTGGAAATCAAAACGAATAGAGCAGGAATATAGGAAGCTTAAAGATGAATATGACTGCTTAGCTTCTCGCTTTGAGTCTCTAAAGAAAGAGAAGGACTCCTTACAATTAGAGCTAAAGAAGCTGAATGATTTGATGGTGGTATCAGCATCTCATCATGATGGAAGAAGACAAGAGAAGGTTATTGCAAAGGGAAGTATCACAGATGATGGTGGTTCAGGAAGTCCTCACAGCAATTGGAGGCCTAACGAAGAAGAAGAGGAAGCAAAGACAAGTTTTTCAAATGAGGGTGTTGATGATGACACAGTACCTTTACCTTCTGATGATAAACCTGATGAGGAAAGAGAGCACCACCGCCATCACCACCACCAAGTTATGAGAATGGATGATGAGGAGCAGCATTTAGAGATTCCTTTGGAATCACTTGAGAAATGGTACAGTGAGGATCCAAGTGGAATCTTGGATCAATCATGTAGCACTTCACAATGGTTGGATTTCTGGACTTGA 783 0.4061 MMDGDDEYIQASKGKNVESFTCSEVALPQNKNAKKKKSKIENKRRFSDEQIRSLECIFESESKLEPRKKIQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDCLASRFESLKKEKDSLQLELKKLNDLMVVSASHHDGRRQEKVIAKGSITDDGGSGSPHSNWRPNEEEEEAKTSFSNEGVDDDTVPLPSDDKPDEEREHHRHHHHQVMRMDDEEQHLEIPLESLEKWYSEDPSGILDQSCSTSQWLDFWT* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3472 260 SUPERFAMILY Homeodomain-like 33 97 IPR009057 -
Amo13g3472 260 CDD homeodomain 43 98 IPR001356 GO:0003677
Amo13g3472 260 Pfam Homeobox associated leucine zipper 97 138 IPR003106 GO:0006355|GO:0043565
Amo13g3472 260 PRINTS Lambda-repressor HTH signature 68 77 IPR000047 GO:0003677
Amo13g3472 260 PRINTS Lambda-repressor HTH signature 77 93 IPR000047 GO:0003677
Amo13g3472 260 ProSiteProfiles 'Homeobox' domain profile. 37 97 IPR001356 GO:0003677
Amo13g3472 260 Coils Coil 89 137 - -
Amo13g3472 260 MobiDBLite consensus disorder prediction 143 223 - -
Amo13g3472 260 SMART HOX_1 40 101 IPR001356 GO:0003677
Amo13g3472 260 Gene3D - 23 102 - -
Amo13g3472 260 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 260 - -
Amo13g3472 260 MobiDBLite consensus disorder prediction 172 187 - -
Amo13g3472 260 MobiDBLite consensus disorder prediction 195 223 - -
Amo13g3472 260 ProSitePatterns 'Homeobox' domain signature. 72 95 IPR017970 GO:0000981|GO:0006355
Amo13g3472 260 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 5 260 IPR045224 GO:0003700
Amo13g3472 260 Coils Coil 30 50 - -
Amo13g3472 260 Pfam Homeodomain 43 95 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3472 Amo-Chr13 117218241 117220256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3472 31 260 Homeobox Transcription Factor Family AT2G46680 39.216 2.43e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo13g3472 Homeodomain 2.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3472 K09338 - gmx:100499926 309.301