Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3469 ATGTATAATTGTGAGACTGAGGAGGAGGGAGAAAAGCAGAGAAAAAAAGAGAGCACTTGTGTTGTGAGGTGTGAGAAAAGAAAGAAAGAAAGAAAGATGGAAAACAGGGAGGAAGATGTGAAGGTAGGAGCAAGCAAGTTCAGAGAGAGGCAGGCAATAGGGACAGCAGCACAAACAGAGAGAGACTACAAGGAGGCACCAGCAGCACCATTGTTTGAGGCAGGTGAGCTCAAGTCATGGTCGTTCTACAGAGCAGGCATTGCTGAGTTTGTGGCCACTTTCTTGTTCCTCTACATCACGGTCTTGACTGTAATGGGTGTCAAGAGGGAGCCCTCCATGTGCTCCTCTGTTGGAATCCAGGGTATTGCTTGGGCCTTTGGTGGCATGATCTTCGCCCTTGTCTACTGCACTGCTGGAATCTCAGGTGGACACATAAACCCAGCAGTCACCTTTGGACTCTTTTTGGCAAGGAAGTTGTCCCTCACAAGGGCAATATTCTACATAGTCATGCAGTGTCTTGGAGCTATATGTGGTGCTGGTGTAGTGAAGGGATTTGAGGGTAATGCTCGCTATGAGATTTTAAAAGGAGGAGCCAATATGGTCAACCATGGTTACACCAAGGGTGATGGCCTTGGAGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACCGTTTTCTCTGCTACTGATGCCAAGAGAAACGCTAGGGACTCTCATGTCCCTGTTTTGGCCCCTCTCCCCATTGGCTTTGCTGTGTTCTTGGTCCACTTGGCTACCATTCCCATCACAGGAACTGGCATTAACCCAGCAAGGAGTCTCGGAGCTGCCATTATCTACAACAGGGACGAAGCGTGGGATGACCATTGGGTTTTCTGGGTTGGACCTTTCATAGGAGCTGCTCTTGCTGCCGTGTATCACCAGATAGTGATCCGAGCCATTCCGTTCAAGACAAGGGCTTAA 960 0.4906 MYNCETEEEGEKQRKKESTCVVRCEKRKKERKMENREEDVKVGASKFRERQAIGTAAQTERDYKEAPAAPLFEAGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVKREPSMCSSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFEGNARYEILKGGANMVNHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPVLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDEAWDDHWVFWVGPFIGAALAAVYHQIVIRAIPFKTRA* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3469 319 TIGRFAM MIP: MIP family channel proteins 88 305 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g3469 319 ProSitePatterns MIP family signature. 144 152 IPR022357 -
Amo13g3469 319 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 35 317 IPR034294 -
Amo13g3469 319 Gene3D Glycerol uptake facilitator protein. 69 317 IPR023271 -
Amo13g3469 319 SUPERFAMILY Aquaporin-like 76 311 IPR023271 -
Amo13g3469 319 Pfam Major intrinsic protein 76 306 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g3469 319 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 13 35 317 - -
Amo13g3469 319 CDD MIP 84 309 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g3469 319 PRINTS Major intrinsic protein family signature 163 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g3469 319 PRINTS Major intrinsic protein family signature 126 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g3469 319 PRINTS Major intrinsic protein family signature 249 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g3469 319 PRINTS Major intrinsic protein family signature 84 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g3469 319 PRINTS Major intrinsic protein family signature 213 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g3469 319 PRINTS Major intrinsic protein family signature 289 309 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3469 Amo-Chr13 117030065 117031797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3469 33 318 Major Intrinsic Protein MIP AT4G23400 86.760 1.62e-179 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3469 K09872 - gmx:100796833 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3469 13 117030065 117031797 Amo13g3469 13 117030065 117031797 ECH