Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3463 ATGGTGGTGAGGAATTGGGTGGTGAAGGTGGTTGTGCCCCCAGAAACAGGTGAAGCACAAGGGAGTGATAATAATGATGGTTGGGATGATGATGAGGGTTATGGCTGGAATGCGAATGTGAAAGAAAGTGAGGTTGCTAAGGTAAGTGGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAGTGGTAGAGTTCAACAGCAATATCCACTGAGGCCTGATGCTGAAGATTGTGCTTTCTATCTTAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAACCAGGTATTAATTATTCTTCTGTTCCTATTATCAATCTAG 405 0.4123 MVVRNWVVKVVVPPETGEAQGSDNNDGWDDDEGYGWNANVKESEVAKVSGDFDVDGDGNGDDEVEVEGDEEVEKKKDRSSGRVQQQYPLRPDAEDCAFYLKTGTCKFGFNCKFNHPLGRRKNQVLIILLFLLSI* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3463 134 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 116 IPR000571 GO:0046872
Amo13g3463 134 Gene3D - 63 123 - -
Amo13g3463 134 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Amo13g3463 134 SMART c3hfinal6 90 117 IPR000571 GO:0046872
Amo13g3463 134 MobiDBLite consensus disorder prediction 14 36 - -
Amo13g3463 134 PANTHER PROTEIN PHOSPHATASE RELATED 27 124 - -
Amo13g3463 134 SUPERFAMILY CCCH zinc finger 90 119 IPR036855 GO:0046872
Amo13g3463 134 MobiDBLite consensus disorder prediction 49 87 - -
Amo13g3463 134 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 27 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3463 Amo-Chr13 116336372 116336776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3463 87 119 C2H2 Transcription Factor Family AT1G29570 54.545 1.77e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo13g3463 zf-CCCH 9.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3463 - - aip:110269499 215.312