Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3453 ATGATAAAGATCGCCGCAAAACTTAATAGGAGCTTGGTGAAAATAAACACGTGTGGGAAGGGTTACCTTGGTGCAGGATTCAGCAGATATAGCACTGCCACTGCCCTTGAAGAAGAACCAATAAAACCAGCAGTGCAAGTAGAACACACCCAACTCCTGATTGGTGGGAAATTCGTTGATGCTCTTTCTGGTAAAACTTTTCCAACCTTGGATCCAAGAACAGGGGAAGTGATTGCTCATGTTGCTGAGGGTCACTCTGAAGATGTTGATAGAGCAGTTGCAGCCGCAAGAAAGGCATTTGATCAAGGGCCATGGCCTAAGATGACAGCCTATGTAATTCATACCATTGGACCTTTATTTTATTCTTTTTATKAGCAAAGGATATTGTTGCGAGCTGCCGATCTGCTTGAGAAGCACAATGATGAGCTTGCAGCACTTGAGACCTGGGATAATGGGAAGCCATATGAACAATCTGCTCAGATTGAAATCCCAATGCTTGTTCGCCTTTTCCGGTACTATGCTGGTTGGGCAGATAAGATCCATGGTATGACCGTTCCGGCTGATGGGCAATATCATGTGCAAACATTGCACGAACCGATCGGTGTTGCTGGTCAGATCATTCCCTGGAATTTCCCTCTCCTCATGTTTGCTTGGAAGGTTGGACCGGCATTGGCCTGTGGCAATACAATTGTTCTSAAAACCGCTGAGCAGACACCATTGTCTGCTTTGTACGCAGCAAAACTATTTCATGAGGCTGGACTTCCTGAAGGTGTTTTGAATGTGGTATCAGGCTTTGGTCCCACTGCCGGCGCTGCTCTTGCAAGTCACATGGATGTGGATAAGCTTGCCTTTACTGGTTCTACTGATACCGGGAAAGTTGTCCTTGAGCTAGCGGCTAGAAGCAATCTTAAGCCAGTAACTTTGGAGCTTGGTGGAAAATCTCCTTTTATTGTATGTGAGGATGCCGATGTAGATCAGGCGGTTGAGCTAGCACACTTTGCCTTATTCTTTAATCAGGGACAATGTTGCTGTGCTGGGTCTAGGACATATGTACATGAACGTGTATATGACGAGTTTGTAGAGAAAGCAAAGGCTCGTGCTTTGAAACGTATTGTTGGTGATCCATTCAAGAGTGGAATAGAGCAAGGTCCTCAGAATGCTACATTGCTGCCAATTTCATATTCCATTGTTTCAAGATGCGAGTCGTTTGAAATGCGTGGCTATACTGATGATTTCATTTATGATAACAACCATCAGATTGATTCTGAACAATTTGAGAAGATACTGAAGTATATCAGATCCGGCGTTCAAAGTGGAGCTACACTAGAAACCGGAGGAGATAGACTTGGCAGCAAGGGCTTCTATGTTCAGCCTACCGTCTTCTCAAATGTTGAGGATGGCATGCTGATTGCAAAGGAAGAAATATTTGGCCCGGTGCAATCCATACTAAAATTCAAGGACCTCGATGAGGTTATTGAAAGAGCGAACAACACGCGGTATGGACTGGCGGCAGGGGTGTTCACGAAGAACATAGACACGGCGAACACGCTGACGAGAGCGTTGAGAGTTGGAACAGTTTGGGTGAACTGCTTTGACACATTTGATGCAGCAATTCCATTTGGTGGTTACAAGATGAGTGGGCAGGGAAGGGAAAAGGGAGAGTACAGCCTCAAGAATTACTTGCAAGTCAAGGCAGTTGTTACCCCTTTGAAGAACCCTGCTTGGCTTTAG 1731 0.4529 MIKIAAKLNRSLVKINTCGKGYLGAGFSRYSTATALEEEPIKPAVQVEHTQLLIGGKFVDALSGKTFPTLDPRTGEVIAHVAEGHSEDVDRAVAAARKAFDQGPWPKMTAYVIHTIGPLFYSFYXQRILLRAADLLEKHNDELAALETWDNGKPYEQSAQIEIPMLVRLFRYYAGWADKIHGMTVPADGQYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYAAKLFHEAGLPEGVLNVVSGFGPTAGAALASHMDVDKLAFTGSTDTGKVVLELAARSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTYVHERVYDEFVEKAKARALKRIVGDPFKSGIEQGPQNATLLPISYSIVSRCESFEMRGYTDDFIYDNNHQIDSEQFEKILKYIRSGVQSGATLETGGDRLGSKGFYVQPTVFSNVEDGMLIAKEEIFGPVQSILKFKDLDEVIERANNTRYGLAAGVFTKNIDTANTLTRALRVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3453 576 Pfam Aldehyde dehydrogenase family 60 385 IPR015590 GO:0016491
Amo13g3453 576 Pfam Aldehyde dehydrogenase family 419 566 IPR015590 GO:0016491
Amo13g3453 576 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 312 572 IPR016163 GO:0016620
Amo13g3453 576 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 417 576 - -
Amo13g3453 576 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL-LIKE 417 576 - -
Amo13g3453 576 CDD ALDH_F2BC 47 568 - -
Amo13g3453 576 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 37 311 IPR016162 GO:0016491
Amo13g3453 576 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 336 347 IPR016160 GO:0016491
Amo13g3453 576 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL-LIKE 19 386 - -
Amo13g3453 576 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 308 315 IPR029510 GO:0016491
Amo13g3453 576 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 19 386 - -
Amo13g3453 576 SUPERFAMILY ALDH-like 87 570 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3453 Amo-Chr13 116115419 116119152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3453 22 576 Aldehyde Dehydrogenase Gene Family AT3G48000 72.793 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3453 K00128 - gmx:100777399 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3453 13 116115419 116119152 Amo13g3453 13 116115419 116119152 ECH