Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3441 ATGGGCGGTTGTTGCTGTTGTTGTTCTCCCAAAGTGACCGAATTGAGCGCTCCAACTGCATACTACTATTACCCAAGAGCATCAGAGGAGCATGTTCCACTTTCATCTCACCCGGGTGCTGCGTCTGCTTTCTCTGGGCGACTCTTAGTTGATACTAATCTAGATACTTCAAGCCCCGATACTTACAGACCACCTCCTGCTCCTATTCCCTTCAATGTCACCTTAGGTACCACTCACACACCATCTGTGGCTCAAGAAATTGTTGGAGACAAGAGTAATGCTTCCTTACAATCTACGAATTCTAATTCGATTCAAGAACCAGTTGCTGGAGATAATCATGGGACCTCAACTAAATTGGAAGAGCTGAAAGAATCAGAAGGCAGAGCTCAGACTGATTTAGAACTCGAGTCAACTAAGGATTCTGAGATTGAACTTCCAAAGTTGAGAAAACCTATAAATTTAGCTGAAGAGGAGGATTCGTGCCCAATTTGTTTAGAAGAGTATGATACAGAAAATCCAAAACTCACCACCAAATGTGACCATCATTTTCACCTTGCATGCATCCTGGAGTGGATGGAAAGAAGTGAAACTTGCCCTGTGTGTGATCAGGAAATGGTTTTCAACCCTCCCATCGAATAA 639 0.4351 MGGCCCCCSPKVTELSAPTAYYYYPRASEEHVPLSSHPGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTLGTTHTPSVAQEIVGDKSNASLQSTNSNSIQEPVAGDNHGTSTKLEELKESEGRAQTDLELESTKDSEIELPKLRKPINLAEEEDSCPICLEEYDTENPKLTTKCDHHFHLACILEWMERSETCPVCDQEMVFNPPIE* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3441 212 Pfam Ring finger domain 159 201 IPR001841 -
Amo13g3441 212 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 212 - -
Amo13g3441 212 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Amo13g3441 212 SMART ring_2 161 201 IPR001841 -
Amo13g3441 212 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 212 - -
Amo13g3441 212 MobiDBLite consensus disorder prediction 94 140 - -
Amo13g3441 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 207 IPR013083 -
Amo13g3441 212 MobiDBLite consensus disorder prediction 94 112 - -
Amo13g3441 212 MobiDBLite consensus disorder prediction 116 140 - -
Amo13g3441 212 SUPERFAMILY RING/U-box 154 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3441 Amo-Chr13 115796694 115799551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3441 1 208 C3H Transcription Factor Family AT5G41350 55.660 9.18e-74 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3441 - - gmx:100816369 374.015