Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3440 ATGGCAGGATGGTCAACTTGGTCAAATGGGTCGTCCTTAGATTTCAATGAAGTTGAGATATTTGATGTATGTAATGGTAATGACTGTAGGAATCTAAACGATCACAGTGATAATGATGACCATGACAAAGTTAAAACCTTGTTTGATGAAGTTTTTCCGGTTTATCTAAAGGAGAGTTGTTCTCGTGGCATTGTTCGGCCTATGCCGGTTTTGCTGGGTGATGGACAAGCAGTGGATTTGTACAAACTCTTCTCTCTTGTGAAGGAAATAGGTGGATATGATTTTGTGTCAAGAAAAGGATTGTGGGGTTATGTGTCAAAGGAAATGGGTTTGAACCACCAAGTTTTGGCATCGATGAAATTAATTTTTGATAAGTATCTGAATGAGTTTGAAGAATGGCTCAGGAAGACTTTCAAAGAGAAGAGTTTCAGAAACGAAAATCATGGGCGTGATTGGGGTTTTAAGTCATTGCTGTTAGAGCTAGAGAAAGAATTGAGAGGCCTATTATCTCTAAACGTAAAGGATAAAGATGACGGGCTTGCAAAGATGGAATCAAATGGAATAAAAGAATATATTGATTTGGTTAACCACAAGGAAGATCCAAATGTATTGGACACCAAAACTCAGAAAATAAATACATATGAGGATGTCCAACACTCCCATGTTGATGATGACGAAAAAGCTTGTAATGGTGTTAAGGAATACTCTGTCACCTTGAACGCGTCAATTGCTGAGAATGGAGTTGGCTCTCGCAAGCGCAAACGGGAACCATTATCTGGAATGCTGAACTGGGTTAGGCAAGTTGCAAAGCATCCCTTTGTTCCTTTACAGCAACCATTACCAAAACCATCAAAGTGGAAGGAGTATAAAGGCAATGACTTTTTCATCCAGTTACTGAGGGCAAGAGAGGCTCGGTTGGTGAAACCATGCGCACAACCTAACAATGAAACACCTTCTTCACAGAAGCAGAAGATGTGCCCTGATATGTACGAGGATCACGTTGCACCTCGTTACCATTCTTCTCCAAGACTGAGATGTAGTGAAAGGCTGCCAGCACATGTTAAATCTCGCACATGCTCTTGTTGCAATTCAGGTTCTGCCAATGGGAAAAAATTAACAAGTTCAGTCAATACAGAGGCCGAAAATTGTTTCTTGCATAAAACAACTGCAACAGTAGATTCATCGACTGCAAGGACAGTGATTGAACAGTCTGCAAATGATTTCCAGGAAAAGCATGTTTCTGTGGGTCCTCTTTATCAAGCAGATGTCCCAGAATGGACAGGTGAAGTTTGTGAGAGTGACTCAAAGTGGTTAGGCACTCGAGTATGGCCTCAGAAACATGACTTAGATCTTCCAAGTGAAACGGATCTTGTAGGGAGAGGAAGACAAGGCAATTGTGAGTGCCATTTTAAAGGTTCTGTTGAGTGTGTTAGATTTCATATTGCTGAAAGAAGGATGAAATTGAGGCGTGACCTGGGTTCTGCATTTTATCATTGGGGGTTCGATCGCATGGGTGAGGAAATTTCACTTCAATGGACAATCGAAGATGAAAAGAGATTCAAGGATTTGATGAGTCAGAGTTTTCCATCTCAAAACAAGTGTTTCTGGAGCAACAAATCAAGATACTTTCCAGACAAGACAAGAAGGGACTTGGTGAGTTATTACTTTAATATGTATCTTATTCAACTAAGAAGCTATCAGAACCGTGTGACTCCAAATAGTGTTGATAGTGATGAAGATGAAGTGGAGTTCGGATCTTTTAGCGAAGGTTTTGGGATGGGAGCTCTCAAAATCCCAGGTTCCAATTTCCTGGAGTGTTCACTGAATAAGCAATGCACTGATTTAGATTAA 1851 0.4052 MAGWSTWSNGSSLDFNEVEIFDVCNGNDCRNLNDHSDNDDHDKVKTLFDEVFPVYLKESCSRGIVRPMPVLLGDGQAVDLYKLFSLVKEIGGYDFVSRKGLWGYVSKEMGLNHQVLASMKLIFDKYLNEFEEWLRKTFKEKSFRNENHGRDWGFKSLLLELEKELRGLLSLNVKDKDDGLAKMESNGIKEYIDLVNHKEDPNVLDTKTQKINTYEDVQHSHVDDDEKACNGVKEYSVTLNASIAENGVGSRKRKREPLSGMLNWVRQVAKHPFVPLQQPLPKPSKWKEYKGNDFFIQLLRAREARLVKPCAQPNNETPSSQKQKMCPDMYEDHVAPRYHSSPRLRCSERLPAHVKSRTCSCCNSGSANGKKLTSSVNTEAENCFLHKTTATVDSSTARTVIEQSANDFQEKHVSVGPLYQADVPEWTGEVCESDSKWLGTRVWPQKHDLDLPSETDLVGRGRQGNCECHFKGSVECVRFHIAERRMKLRRDLGSAFYHWGFDRMGEEISLQWTIEDEKRFKDLMSQSFPSQNKCFWSNKSRYFPDKTRRDLVSYYFNMYLIQLRSYQNRVTPNSVDSDEDEVEFGSFSEGFGMGALKIPGSNFLECSLNKQCTDLD* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3440 616 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 616 - -
Amo13g3440 616 SMART bright_3 43 136 IPR001606 GO:0003677
Amo13g3440 616 Pfam ARID/BRIGHT DNA binding domain 56 131 IPR001606 GO:0003677
Amo13g3440 616 SUPERFAMILY ARID-like 47 136 IPR036431 GO:0003677
Amo13g3440 616 CDD ARID 45 131 - -
Amo13g3440 616 Gene3D - 28 145 IPR036431 GO:0003677
Amo13g3440 616 ProSiteProfiles ARID domain profile. 42 135 IPR001606 GO:0003677
Amo13g3440 616 ProSiteProfiles ELM2 domain profile. 411 457 IPR000949 -
Amo13g3440 616 SMART ARID_2 39 131 - -
Amo13g3440 616 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3440 Amo-Chr13 115748627 115752808 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Amo13g3440 ARID 4.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3440 - - gmx:100819320 717.998