Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3434 ATGGCAGGATGGTCAACTTGGTCAAATGGGTCGTCCTTAGATTTCAATGAAGTTGAGATATTTGATGTATGTAATGGTAATGACTGTAGGAATCTAAACGATCACAGTGATAATGATGACCATGACAAAGTTAAAACCTTGTTTGATGAAGTTTTTCCGGTTTATCTAAAGGAGAGTTGTTCTCGTGGCATTGTTCGGCCTATGCCGGTTTTGCTGGGTGATGGACAAGCAGTGGATTTGTACAAACTCTTCTCTCTTGTGAAGGAAATAGGTGGATATGATTTTGTGTCAAGAAAAGGATTGTGGGGTTATGTGTCAAAGGAAATGGGTTTGAACCACCAAGTTTTGGCATCGATGAAATTAATTTTTGATAAGTATCTGAATGAGTTTGAAGAATGGCTCAGGAAGACTTTCAAAGAGAAGAGTTTCAGAAACGAAAATCATGGGCGTGATTGGGGTTTTAAGTCATTGCTGTTAGAGCTAGAGAAAGAATTGAGAGGCCTATTATCTCTAAACGTAAAGGATAAAGATGACGGGCTTGCYAAGATGGAATCAAATGGAATAAAAGAATATATTGATTTGGTTAACCACAAGGAAGATCCAAATGTATTGGACACCAAAACTCAGAAAATAAATACATKTGAGGATGTCCAACACTCCCATGTTGATGATGACGAAAAAGCTTGTAATGGTGTTAAGGAATACTCTGTCACCTTGAACGCGRCAATTGCTGAGAATGGAGTTGGCTCTCGCAAGCGCAAACGGGAACCATTATCTGGAATGCTGAACTGGGTTAGGCAAGTTGCAAAGCATCCCTTTGTTCCTTTACAGCAACCATTACCAAAACCATCAAAGTGGAAGGAGTATAAAGGCAATGACTTTTTCATCCAGTTACTGAGGGCAAGAGAGGCTCGGTTGGTGAAACCATGCGCACAACCTAACAATGAAACACCTTCTTCACAGAAGCAGAAGATGTGCCCTGATATGTACGAGGATCACGTTGCACCTCGTTACCATTCTTCTCCAAGACTGAGATGTAGTGAAAGGCTGCCAGCACATGTTAAATCTCGCACATGCTCTTGTTGCAATTCAGGTTCTGCCAATGGGAAAAAATTAACAAGTTCAGTCAATACYGAGGCCGAAAATTGTTTCTTGCATAAAACAACTGCAACAGTAGATTCATCGACTGCAAGGACAGTGATTGAACAGTCTGCAAATGATTTCCAGGAAAAGCATGTTTCTGTGGGTCCTCTTTATCAAGCAGATGTCCCAGAATGGACAGGTGAAGTTTGTGAGAGTGACTCAAAGTGGTTAGGCACTCGAGTATGGCCTCAGAAACATGACTTAGATCTTCCAAGTGAAACYGATCTTGTAGGGAGAGGAAGACAAGGCAATTGTGAGTGCCATTTTYAAGGTTCTGTTGAGTGTGTTAGATTTCATATTGCTGAAAGAAGGATGAAATTGAGGCGTGACCTGGGTTCTGCATTTTATCATTGGGGGTTCGATCGCATGGGTGAGGAAATTTCACTTCAATGGACAATRGAAGATGAAAAGAGATTCAAGGATTTGATGAGTCAGAGTTTTCCATCTCAAAACAAGTGTTTCTGGAGCAACAAATCAAGATACTTTCCAGACAAGACAAGAAGGGACTTGGTGAGTTATTACTTTAATATGTATCTTATTCAACTAAGAAGCTATCAGAACCGTGTGACTCCAAATAGTGTTGATAGTGATGAAGATGAAGTGGAGTTCGGATCTTTTAGCGAAGGTTTTGGGATGGGAGCTCTCAAAATCCCAGGTCCCTATCAAGATGGTGTGTGGAAGATTAGGGTGGAGCTACCTGATGCTTATCCTTATAAGTCCCCCTCTATTGGTTTTGTAAACAAAATTTACCACCCCAATGTTGATGAAATGTCTGGATCAGTTTGCTTAGATGTTATTAACCAGACCTGGAGTCCCATGTTTGACCTTGTTAATGTGTTTGAAGTGTTTCTTCCTCAACTTCTTCTGTACCCGAACGCATCAGATCCGTTGAATGGTGATGCTGCTGCCTTAATGATGCGAGATCATGCAGCATATGAACAAAAAGTCAAAGAATATTGTGAAAAATATGCCAAGCCAGAAGATATTGGAGCTACTCAGGAAGAAAATTCGAGTGACGATGAGCTAAGTGAAGAAGAATATGATGCCTCTAGTGATGACGCCATTGCGGGGGAACCTGATCCTTAG 2229 0.4083 MAGWSTWSNGSSLDFNEVEIFDVCNGNDCRNLNDHSDNDDHDKVKTLFDEVFPVYLKESCSRGIVRPMPVLLGDGQAVDLYKLFSLVKEIGGYDFVSRKGLWGYVSKEMGLNHQVLASMKLIFDKYLNEFEEWLRKTFKEKSFRNENHGRDWGFKSLLLELEKELRGLLSLNVKDKDDGLAKMESNGIKEYIDLVNHKEDPNVLDTKTQKINTXEDVQHSHVDDDEKACNGVKEYSVTLNAXIAENGVGSRKRKREPLSGMLNWVRQVAKHPFVPLQQPLPKPSKWKEYKGNDFFIQLLRAREARLVKPCAQPNNETPSSQKQKMCPDMYEDHVAPRYHSSPRLRCSERLPAHVKSRTCSCCNSGSANGKKLTSSVNTEAENCFLHKTTATVDSSTARTVIEQSANDFQEKHVSVGPLYQADVPEWTGEVCESDSKWLGTRVWPQKHDLDLPSETDLVGRGRQGNCECHFXGSVECVRFHIAERRMKLRRDLGSAFYHWGFDRMGEEISLQWTXEDEKRFKDLMSQSFPSQNKCFWSNKSRYFPDKTRRDLVSYYFNMYLIQLRSYQNRVTPNSVDSDEDEVEFGSFSEGFGMGALKIPGPYQDGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNGDAAALMMRDHAAYEQKVKEYCEKYAKPEDIGATQEENSSDDELSEEEYDASSDDAIAGEPDP* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3434 742 SUPERFAMILY ARID-like 47 136 IPR036431 GO:0003677
Amo13g3434 742 SMART bright_3 43 136 IPR001606 GO:0003677
Amo13g3434 742 Gene3D Ubiquitin Conjugating Enzyme 595 718 IPR016135 -
Amo13g3434 742 ProSiteProfiles ARID domain profile. 42 135 IPR001606 GO:0003677
Amo13g3434 742 MobiDBLite consensus disorder prediction 704 742 - -
Amo13g3434 742 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 601 - -
Amo13g3434 742 SMART ARID_2 39 131 - -
Amo13g3434 742 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 601 - -
Amo13g3434 742 Pfam ARID/BRIGHT DNA binding domain 56 131 IPR001606 GO:0003677
Amo13g3434 742 CDD UBCc 601 701 IPR000608 -
Amo13g3434 742 Pfam Ubiquitin-conjugating enzyme 600 700 IPR000608 -
Amo13g3434 742 Gene3D - 28 145 IPR036431 GO:0003677
Amo13g3434 742 SUPERFAMILY UBC-like 600 706 IPR016135 -
Amo13g3434 742 MobiDBLite consensus disorder prediction 714 742 - -
Amo13g3434 742 CDD ARID 48 131 - -
Amo13g3434 742 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 631 647 IPR023313 -
Amo13g3434 742 SMART ubc_7 559 706 - -
Amo13g3434 742 ProSiteProfiles ELM2 domain profile. 411 457 IPR000949 -
Amo13g3434 742 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 546 706 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3434 Amo-Chr13 115598276 115605269 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Amo13g3434 UQ_con 4.6e-31 CL0208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3434 - - gmx:100819320 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3434 13 115598276 115605269 Amo13g3434 13 115598276 115605269 ECH