Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3430 ATGTCTTCTGGTCTGTATTCATTTGAAACCACTTTCCAAGCACATTCAAGCTCAGACATGGTCACTGCTGATGGAGGAGACCTTGCTTTTCTCACTGACCCTTTTCCTTTCTTCGAAAACAGCACTACTAATAATGATATTGGTCAACACTGTTCGAGCAACCAAAGCATGTTCGATGAGGCTCTTTCTTCTTCTTCTGTTGACCCTTTTTCATCTTGCTTCTTTTCTTTCTCTCCTCCAAGTACGCACTTAGAAAACCTTAGCCTTCAGGCCAACAACAAGAACAACCGTGTTGATCCCAATTTGGAGAGTGACTTTGCAAGTTTCTCATCGGGTTTTGATGTGACACAAGTAGTGAAGAGCGAGGAGTGCCAAATCGCTGTTGAATTTGATTATGGATATAATAATCATAATCACCAACACTTTTTTCCCCACAGTTATAGCGGTGCTGAGAATGTGGCAAAATACATGCAGAGGAGTTTCAGCAGCAACTCCTTTCATGGCAAACCTGGGAATTTTCTGTTCCAAAATAATCACTCTGACACACTAAACAACAATAATAATAATAACAACATGGAATCTCCAAGTTTTCAAAGACATGATATGAGTTCACCTGAAAACAGTGCCTTCAATGGACAAATGAGGAGGGTGTGCAGCACTGGAGATCTGCAGAAGTGTCAAAGGGAAGGATCATTGTTGGAGGAACCGAATTTCAAAGTAGGGCGTTATAGTGCTGAAGAAAGAAAAGAAAGAATATCAAAATATAGAGCCAAGAGAAGCCAGAGGAACTTCAACAAAACCATCAAGTATGCATGCCGAAAAACACTAGCCGACAATCGACCGCGCATACGTGGCAGATTCGCACGCAACGACGAGGAGCGCGACATTATTCCTATTCCAAATCACAACGCTCCATGTTCAGCCCGAGATGATGAAGACGAAGAAGTCGATTTCTGGATTGAAGGGTTGCAGTTGCATGAAGAGCAGGAGGATGTAACAGTCAACGCTTATGGACCTAATCAGTTTCAGTACTTTCGTTTCTAA 1044 0.4215 MSSGLYSFETTFQAHSSSDMVTADGGDLAFLTDPFPFFENSTTNNDIGQHCSSNQSMFDEALSSSSVDPFSSCFFSFSPPSTHLENLSLQANNKNNRVDPNLESDFASFSSGFDVTQVVKSEECQIAVEFDYGYNNHNHQHFFPHSYSGAENVAKYMQRSFSSNSFHGKPGNFLFQNNHSDTLNNNNNNNNMESPSFQRHDMSSPENSAFNGQMRRVCSTGDLQKCQREGSLLEEPNFKVGRYSAEERKERISKYRAKRSQRNFNKTIKYACRKTLADNRPRIRGRFARNDEERDIIPIPNHNAPCSARDDEDEEVDFWIEGLQLHEEQEDVTVNAYGPNQFQYFRF* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3430 347 PANTHER CCT MOTIF FAMILY PROTEIN 24 344 - -
Amo13g3430 347 ProSiteProfiles CCT domain profile. 248 290 IPR010402 GO:0005515
Amo13g3430 347 Pfam CCT motif 248 290 IPR010402 GO:0005515
Amo13g3430 347 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 24 344 IPR045281 GO:0009909
Amo13g3430 347 MobiDBLite consensus disorder prediction 187 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3430 Amo-Chr13 115369771 115371520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3430 244 292 C2C2-CO-like Transcription Factor Family AT5G57660 53.061 1.21e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo13g3430 CCT 9.2e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3430 - - adu:107479916 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3430 13 115369771 115371520 Amo13g3430 13 115369771 115371520 ECH
Amo05g2436 05 51957721 51959476 Amo13g3430 13 115369771 115371520 PCT