Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3423 ATGGGGAACACTTGTGTTGGTCCTAGCATTAAAAATGGGTTTCTTCAGTCGGTTTCTGCGGCAATGTGGAGGTCGCAATCGCCAGATGAATTGGCATCCAATCGAGAAAGTGTAAAGGAGGAAGCAACCAATGAACCTGAATCTGGGTTGCCTGTCCAGAACAAACCTCCTGAGCAGTTAACTATGCCAAAACATGAGGCAAAAGAAAAATCAAAACCAGAATCAAAGTCAAAAGTGGAAACGGAACCGGAACAGGAGAAGAGTAAACACAGGAAACCAGCTTCTGTGAAGAGAGTTTCGAGTGCAGGGCTTCGTGTTGATTCTGTTTTACAAAGAGAGACTGGTAATTTCAAGGATTTCTTCAGTTTGGGAAGAAAACTTGGACAGGGACAGTTTGGGACAACATTTTTATGTGTTGAGAAGGCAACAGGACAAGAATTTGCCTGTAAATCCATTGCAAAGAGGAAGCTGGTAACTGACGAGGATGTCGAGGATGTGAGGAGAGAAATTCAGATAATGCACCACTTGTCTGGCCATCCAAATGTTATTTCCATTAAAGGTGCTTATGAGGATGCGATAGCGGTTTATGTTGTGATGGAATTATGTGCAGGTGGTGAGCTTTTCGATAGGATTATTCAGCGTGGACATTACACTGAAAGAAAGGCTGCCGATCTTATACGGACCATAGTTGGGGTTGTGGAAGCTTGTCATTCTCTTGGTGTGATGCATAGAGACCTTAAACCTGAGAATTTTCTTTTTGTGAATCAGCATGAGGATGCACTTCTCAAAACCATTGACTTTGGATTATCCGTGTTCTTTAAGCCAGGTGATATATTCAATGATGTGGTTGGCAGCCCATATTATGTTGCCCCAGAAGTTCTGCGAAAGAGGTACGGTCCTGAAGCAGATGTTTGGAGTGCTGGAGTTATCCTGTATATTCTTTTGAGTGGAGTTCCTCCATTTTGGGCAGAAAATGAACAAGGAATATTTGAACAGGTTCTGCGTGGTGATCTTGATTTCTCGTCAGATCCCTGGCCTGCAATTTCGGAAAGTGCTAAAGATTTAGTAAGGAAAATGCTTGTTCGGGATCCTAGAAGGCGGATGACTGCCCATCAAGTACTATGTCATCCATGGATTCAAGTTGATGGTGTTGCTCCAGACAAGCCACTTGATTCTGCTGTACTAAGTCGCCTGAAACAATTTTCTGCTATGAATAAACTTAAGAAAATGGCTCTTATAGTAACTGGCTTAAAGGAAATGTTCAAGATGATAGATACAGACAACAGTGGTCAAATAACTTTCGAAGAACTTAAAGCTGGCTTGAAAAGATTTGATGCTAATCTTAAGGAATCTGAGATCTATGATTTAATGCAAGCAGCTGATATAGATAACAGTGGAACAATTGATTATGGCGAGTTCATTGCTGCAACCTTGCATCTTAATAAGATTGAAAGAGAAGATCATTTATTTGCAGCCTTTACATACTTTGATAAAGATGGAAGTGGTTATATTACCCAAGATGAACTTCAACAGGCTTGTGATGAGTTTGGCATTGAAGATGCCCGCTTGGAAGAGATAATCAAAGAAATCGATCAAGATAATGATGGGCGCATAGATTATAATGAGTTTGTGGCCATGATGCAGAATGGAAGCCTTCCCATGGTTGGTAGAAAGGGCGTAGAACATAGCTTCAGCATTGGTTTCAGGGAGACATTAAAACTATAA 1725 0.4116 MGNTCVGPSIKNGFLQSVSAAMWRSQSPDELASNRESVKEEATNEPESGLPVQNKPPEQLTMPKHEAKEKSKPESKSKVETEPEQEKSKHRKPASVKRVSSAGLRVDSVLQRETGNFKDFFSLGRKLGQGQFGTTFLCVEKATGQEFACKSIAKRKLVTDEDVEDVRREIQIMHHLSGHPNVISIKGAYEDAIAVYVVMELCAGGELFDRIIQRGHYTERKAADLIRTIVGVVEACHSLGVMHRDLKPENFLFVNQHEDALLKTIDFGLSVFFKPGDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLSGVPPFWAENEQGIFEQVLRGDLDFSSDPWPAISESAKDLVRKMLVRDPRRRMTAHQVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALIVTGLKEMFKMIDTDNSGQITFEELKAGLKRFDANLKESEIYDLMQAADIDNSGTIDYGEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITQDELQQACDEFGIEDARLEEIIKEIDQDNDGRIDYNEFVAMMQNGSLPMVGRKGVEHSFSIGFRETLKL* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3423 574 SUPERFAMILY Protein kinase-like (PK-like) 119 380 IPR011009 -
Amo13g3423 574 ProSitePatterns EF-hand calcium-binding domain. 531 543 IPR018247 -
Amo13g3423 574 MobiDBLite consensus disorder prediction 22 99 - -
Amo13g3423 574 SMART efh_1 452 480 IPR002048 GO:0005509
Amo13g3423 574 SMART efh_1 522 550 IPR002048 GO:0005509
Amo13g3423 574 SMART efh_1 416 444 IPR002048 GO:0005509
Amo13g3423 574 SMART efh_1 488 516 IPR002048 GO:0005509
Amo13g3423 574 SMART serkin_6 121 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3423 574 CDD EFh 488 548 IPR002048 GO:0005509
Amo13g3423 574 Gene3D Phosphorylase Kinase; domain 1 123 207 - -
Amo13g3423 574 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 66 558 - -
Amo13g3423 574 Pfam Protein kinase domain 122 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3423 574 MobiDBLite consensus disorder prediction 61 91 - -
Amo13g3423 574 Gene3D Transferase(Phosphotransferase) domain 1 208 419 - -
Amo13g3423 574 Pfam EF-hand domain pair 417 477 IPR002048 GO:0005509
Amo13g3423 574 Pfam EF-hand domain pair 487 548 IPR002048 GO:0005509
Amo13g3423 574 ProSitePatterns Protein kinases ATP-binding region signature. 127 154 IPR017441 GO:0005524
Amo13g3423 574 CDD EFh 417 476 IPR002048 GO:0005509
Amo13g3423 574 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Amo13g3423 574 ProSiteProfiles EF-hand calcium-binding domain profile. 518 553 IPR002048 GO:0005509
Amo13g3423 574 ProSiteProfiles Protein kinase domain profile. 121 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3423 574 Gene3D - 482 570 - -
Amo13g3423 574 SUPERFAMILY EF-hand 417 548 IPR011992 -
Amo13g3423 574 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Amo13g3423 574 Gene3D - 420 478 - -
Amo13g3423 574 CDD STKc_CAMK 120 378 - -
Amo13g3423 574 ProSiteProfiles EF-hand calcium-binding domain profile. 484 517 IPR002048 GO:0005509
Amo13g3423 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Amo13g3423 574 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Amo13g3423 574 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Amo13g3423 574 PANTHER SERINE/THREONINE-PROTEIN KINASE 66 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3423 Amo-Chr13 115087548 115094616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3423 1 569 EF-hand Containing Proteins AT5G04870 75.490 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Amo13g3423 Pkinase 3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3423 K13412 - gmx:100797449 1007.67