Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3415 ATGCATGCGGTGGCAGAGGGAGGGCACTGCGTCTGTGTGCCGCAGCAGGACTGCATGCGTGCGTGCGGCGATGGGGGCACTACGTCCATGAGTGCGGCAGTGTGTGGGAGGGGGCATTACGTCCGTGGGTGCGGCAGTGGGAGGGGGCGCTATGTCCGCCCTGCGGGGGTGGAATGGCGGCGCGTGCGTGCGGCAATGGTCGGCAGCAATGGCAGCGGCGCACACATAGATGTGGAAAAAGGGATAAAACTTTGTGTGATGGTTTTTTTTACTATCGATAATCCTGGAGGAGGAGGAGGAAGCGGCTTTGTATCTGAYYCRGAGATGGAGATGAARTGGAAAACCTTGTTCGCCAACAACGAACCACCACCTCCTACTTGTTTTGATCTAATACTCCAAAACACGCCAAGCCAAGGCCTTTCACTATCTCTTAGCTCAAACAACCCTTCTTCTATTTCTCTCCAATCTTTTCCCCTAAGACAACAACAYCATGAGATGGCGCTGCAAGGCCATTACTCGCTCAAGGCWTCCAGGTTCTTGCTACCGGCACAGCAACTCCTCAACGAGTTCTGTAGCCTAGGAACCAAGCAACTCAATAATCAACTCATCAAGCGTAACAAGAACAACACCAACCCCCCACCTCTTACCTCTCTAGACTTGGTTGAATTGCACAAGAGAAAGGCTAAGCTCCTTGTCATGCTCCAAGAGGTGGATACAAGATACGAGCACTACTGTAATCAGATGAAGGGAGTGGTGGCGTCATTTGAGGCCATGGCGGGGGAGGGAGCGGCCACCGTGTACTCGGCACTTGCGCTCAAGGCCATGTCACGCCACTTCAGATGCTTGAAGGATGGGATACTGGAACAGATAGAGGCCACTCGGAAGGGGATGGGAGAGAAGGATCCAATTGCACCGGGCACCACTAAGGGCCAAACCCCCAGGCTTAGAATCATTGACCAGGCTTTGAGACAGCAAAGGGCTTTTCACCAAACCATCTCCATGGAATCTCATCCCTGGAGACCCCAACGTGGCCTTCCTGAACGTTCCGTTTCTCTTCTCCGCGCTTGGCTTTTCGAGCATTTTCTTCACCCGTACCCAAGTGATGTTGATAAACATATTTTAGCACGCCAAACTGGTCTCTCTAGAAGCCAGGTTTCAAATTGGTTTATCAATGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAAGAGAAGGAGGCTGCTGCAGCATCCTCGGAGGGAGGAGGAGGCAGCAACACTGAAGATTTTCAAAACCTATCTCCAAATTCAGCAGCAAGACCAGAGGATCAGAAGCCTCGCCTACTTCGAATCGATTCGGAATGCATGTCCTCAATCATCAACAACTCTGATCATCGCAAAGATAACCATCAGCAGATGAATCAACAAGAGGAGGAACAGTACTTAGGGCGAGGTGTCGCAGACACGTTTGGATCAGTGGAGATTGATTTCTCATCATATCCTCAGGGCTTCAATAACAGTGGAGGAGGTGCGGTTTCTTTGACGCTAGGGTTACAGCAACACGGTGGAAACGGGGTGAGCTTGGCTTTCCCGCCAGAAACTCATCATCAGCATCAGGCCTCCATGTTCTACTCATCAAGGGACCAGATTATTGAAGACTGTAGTCAACCAGTTCAGTACTCTCTTTTGGATGGCGAAGCACACGCCATGCCCTACAGGAATTTGATGGGGACCCAGTTGCTTCATGACTTGGCCGGATAG 1755 0.5123 MHAVAEGGHCVCVPQQDCMRACGDGGTTSMSAAVCGRGHYVRGCGSGRGRYVRPAGVEWRRVRAAMVGSNGSGAHIDVEKGIKLCVMVFFTIDNPGGGGGSGFVSDXEMEMKWKTLFANNEPPPPTCFDLILQNTPSQGLSLSLSSNNPSSISLQSFPLRQQHHEMALQGHYSLKASRFLLPAQQLLNEFCSLGTKQLNNQLIKRNKNNTNPPPLTSLDLVELHKRKAKLLVMLQEVDTRYEHYCNQMKGVVASFEAMAGEGAATVYSALALKAMSRHFRCLKDGILEQIEATRKGMGEKDPIAPGTTKGQTPRLRIIDQALRQQRAFHQTISMESHPWRPQRGLPERSVSLLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEAAAASSEGGGGSNTEDFQNLSPNSAARPEDQKPRLLRIDSECMSSIINNSDHRKDNHQQMNQQEEEQYLGRGVADTFGSVEIDFSSYPQGFNNSGGGAVSLTLGLQQHGGNGVSLAFPPETHHQHQASMFYSSRDQIIEDCSQPVQYSLLDGEAHAMPYRNLMGTQLLHDLAG* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3415 584 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 121 534 - -
Amo13g3415 584 Pfam Associated with HOX 174 286 IPR006563 -
Amo13g3415 584 Coils Coil 458 478 - -
Amo13g3415 584 SMART HOX_1 339 403 IPR001356 GO:0003677
Amo13g3415 584 SMART prehox3 168 288 IPR006563 -
Amo13g3415 584 Pfam Homeobox KN domain 356 395 IPR008422 GO:0003677|GO:0006355
Amo13g3415 584 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 121 534 - -
Amo13g3415 584 MobiDBLite consensus disorder prediction 418 437 - -
Amo13g3415 584 ProSiteProfiles 'Homeobox' domain profile. 336 399 IPR001356 GO:0003677
Amo13g3415 584 SUPERFAMILY Homeodomain-like 340 405 IPR009057 -
Amo13g3415 584 CDD homeodomain 339 400 IPR001356 GO:0003677
Amo13g3415 584 MobiDBLite consensus disorder prediction 409 446 - -
Amo13g3415 584 Gene3D - 342 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3415 Amo-Chr13 114638194 114642253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3415 118 583 Homeobox Transcription Factor Family AT5G41410 43.400 2.55e-117 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Amo13g3415 POX 1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3415 - - adu:107479887 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3415 13 114638194 114642253 Amo13g3415 13 114638194 114642253 ECH
Amo05g2433 05 51858923 51863439 Amo13g3415 13 114638194 114642253 PCT