Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3395 ATGGTCCGTGAAGAATATAGTACTAAATTTGATGGATCTTCTATTTTGAAGGAGACTGACATTGGGAGGCACGTGAATCGGTTGCGGAAGCATTCCTCCAATGACGTTCGCAGATTGGTGAAGCTACTTGTGAGGAAGTGGAAGGAAATTGTGGTTGAGTGGGTGAGGTTGAATCAACCGGGTGGAACAGCCTCTCTCATGGCTGATGGGGACTCTCCACCGCTGAAAACCACCCAAAACGGGCATCATCGGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGAGTACTTGTGCATCTTATTCAAATTTTCTTTTTGTGTGTGTCTCTGTTGTTTTGGATTTTGGCGAACAATAATGCTTTTTTGCTTTTGTATGCTAACACAGATGGAAGTTCTGGGTCTGACTGTAACACCTCAGAGGCAGAACCAAAACCAAAAATGA 447 0.4385 MVREEYSTKFDGSSILKETDIGRHVNRLRKHSSNDVRRLVKLLVRKWKEIVVEWVRLNQPGGTASLMADGDSPPLKTTQNGHHRIPDFAYSPNPHNEYLCILFKFSFCVCLCCFGFWRTIMLFCFCMLTQMEVLGLTVTPQRQNQNQK* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3395 148 Pfam TFIIS helical bundle-like domain 15 51 IPR017923 -
Amo13g3395 148 ProSiteProfiles TFIIS N-terminal domain profile. 1 54 IPR017923 -
Amo13g3395 148 CDD TFIIS_I 15 51 - -
Amo13g3395 148 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 16 98 IPR044790 -
Amo13g3395 148 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 14 60 IPR035441 -
Amo13g3395 148 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 12 61 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3395 Amo-Chr13 112990395 112991464 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo13g3395 Med26 8.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3395 - - aip:107630755 291.582