Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3385 ATGGATGAGAGCGTCCTCGACGACATCATTCGGAGGCTTCTTGCAGCGAAGAACGGCAGAACGACGAAGCAGGTTCAACTCACTGAGTCAGAAATCCGACAGCTCTGTACTACTTCCAAGGAGATCTTCCTCAGTCAACCCAATCTTCTCGAGCTCGAAGCTCCCATCAAGATTTGCGGAGATGTTCATGGCCAGTATTCAGATCTTCTAAGGTTGTTTGAATATGGGGGATACCCACCTGAGGCAAATTATTTATTCCTTGGAGATTATGTTGATCGTGGTAAACAGAGCATAGAGACGATATGTTTACTCCTTGCATACAAGATCAAATACAAGGAGAACTTCTTTCTTCTTAGGGGCAACCATGAATGTGCCTCCATTAATCGTATATATGGTTTCTATGATGAGTGCAAGAGGAGGTTTAATGTTCGCATTTGGAAGACTTTTACCGACTGCTTTAACTGTCTACCCGTTGCTGCTCTTATAGATGAGAAAATCCTTTGCATGCATGGTGGATTATCTCCTGAGCTTAAACACTTAGATCAGATAAGGAATATTGCTCGTCCAGTTGACGTACCAGATCATGGACTTCTCTGTGACCTGCTGTGGGCTGATCCTGATAAAGATCTTGATGGGTGGGGAGAAAATGACCGAGGTGTGTCATTTACATTTGGTGCTGATAAGGTGGTTGAATTTCTTGAAGAGCATGATCTTGATCTGATTTGCCGAGCTCATCAGGTTGTAGAAGATGGATATGAGTTTTTTGCCAAGCGCCAGCTGGTGACTATATTTTCAGCACCAAATTACTGTGGGGAATTTGATAATGCCGGTGCTATGATGAGCGTGGATGACACCTTGACATGCTCTTTCCAAATACTTAAATCTTCTGACAAGAAGGGTAAAGGTGGATTTGGCAACAACACTTCAAGACCGGGAACTCCTCCTCACAAGGGTGGGAAGGTGTTTAATTGA 972 0.4372 MDESVLDDIIRRLLAAKNGRTTKQVQLTESEIRQLCTTSKEIFLSQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFNVRIWKTFTDCFNCLPVAALIDEKILCMHGGLSPELKHLDQIRNIARPVDVPDHGLLCDLLWADPDKDLDGWGENDRGVSFTFGADKVVEFLEEHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKSSDKKGKGGFGNNTSRPGTPPHKGGKVFN* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3385 323 Pfam Calcineurin-like phosphoesterase 55 247 IPR004843 GO:0016787
Amo13g3385 323 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Amo13g3385 323 Pfam Serine-threonine protein phosphatase N-terminal domain 6 53 IPR031675 -
Amo13g3385 323 SMART pp2a_7 27 297 IPR006186 GO:0016787
Amo13g3385 323 Gene3D - 1 305 IPR029052 -
Amo13g3385 323 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 319 - -
Amo13g3385 323 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Amo13g3385 323 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Amo13g3385 323 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Amo13g3385 323 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Amo13g3385 323 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Amo13g3385 323 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Amo13g3385 323 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Amo13g3385 323 CDD MPP_PP1_PPKL 5 294 - -
Amo13g3385 323 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP1 ISOZYME 3 1 319 - -
Amo13g3385 323 SUPERFAMILY Metallo-dependent phosphatases 22 297 IPR029052 -
Amo13g3385 323 MobiDBLite consensus disorder prediction 299 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3385 Amo-Chr13 112400915 112404833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3385 56 240 Calmodulin-binding Proteins AT5G63870 30.455 4.92e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3385 K06269 - gmx:100783178 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3385 13 112400915 112404833 Amo13g3385 13 112400915 112404833 ECH
Amo13g3385 13 112400915 112404833 Amo03g2396 03 101845005 101848610 hybridization