Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3372 ATGGAACAGAAAAGCATTCTGCTATCTGCGATCGGTGTTGGGGTTGGAGTGGGAGTGGGACTTGGATTGGCCTCTGGACAAGGAGTTGGAATATGGGGAGCTACCACATATTCCTCAAACGCCATAACCGCTGAGAAGATAGAACAGGAAATGCTACGACAAGTTGTTGATGGAAGAGAAAGCACTGTCACTTTTGATAAATTCCCTTATTATCTCAGTGAGCAGACAAGGGTTTTGCTGACAAGTGCTGCTTATGTCCATTTAAAGCATGCCGAGGTTTCCAAGTATACTCGAAATCTTGCCCCTGCAAGCCAAACTATTCTGCTTTCAGGGCCAGCAGAACTCTATCAACAGATGCTTGCAAAGGCTTTGGCACATTACTTTGAGGCCAAGTTGCTTCTTTTAGATTTAACTGACTTTTCATTGAAGATTCAGAGTAGATATGGCTTTGGAAATCAAGAATCTTCTTTCAAAAGATCCACCTCAGAGTCGACCTTGGAGCGATTATCAGACCTATTTGGCTCATTTTCAATCTTTCAACAGAGGGAGGAACCTAAAGGCAGAATACATAGGCAGAGCAGCGGAGCGGACCTACAATCAATGGGGACTGAAGCATCTTGCAATCCTCCAAAGCTCCGCAGGAACGCTTCTTCGTCGTCAAATATTAGCACCCTTGGTTTGCAAAGCAATCATACAAATCCAGCTCCTCTGAAACGCACAACTAGCTGGTCTTTTGATGAAAAGCTTCTTATACAGTCTCTTTACAAGGTTCTGGTTTTTGTGTCTAAGACCTACCCTATTGTGCTATATCTGCGTGACGTTGATAAGTTGATATATAGATCACAAAGGATATATAACTTGTTCCAAAAGATGTTGAAGAAACTATCTGGACCAATACTGATTCTTGGTTCACAAGTTCTTGATTCTAGTAATGACTATGAAGAGGTAGATGACCGGCTTAACTCACTCTTCCCGTACACCATAGAAGTCAAGCCCCCAGACGATGAATCTCATCTTGTCAGCTGGAAGTCTCAGTTGGAAGAGGATATGAAGAAGATACAAGTTCAGGATAACAAGAACCATATCATGGAAGTGCTTGCAGCCAATGACCTTGTTTGTGAAGACCTGGATTCAATCTGTGTTGCTGACACAATGGTTCTCAGTAACTACATAGAAGAGATTATTGTCTCGGCGCTTTCTTACCACTTGATGAAAAGCAAAGACCTTGAATACAGAAATGGGAAACTTGTTATTTCTTGCAATAGTTTATCCCATGCCTTGGGTATATTCCACAAGGGAAAACTCATTGGAAAAAACACATCGAAATTGGAAGATCAAGCTGTTAAATCTGAGGTGCCAAAAGGGGAAGAAAGTGTTACAAACCCAGAAGCAAAGTCTGAAGATGCTGCTCCTGTAAAAAAGCCTGGAGCAGAAGCATCAAAGGAAGAAGGGGAAAAATCAGTTGCATCATCAAAAGCTGCTGAAGTTCCTCCGGATAACGAGTTTGAGAAGCGAATAAGACCCGAGGTGATACCAGCAGATGAGATAGATGTGAAGTTCTCTGATATTGGTGCCTTAGAAGAGACGAAAGAATCCCTCCAAGAACTGGTAATGCTTCCTCTTCGAAGGCCAGACCTCTTCACCGGAGGACTTTTGAAGCCTTGCAGAGGAATATTGCTATTTGGACCTCCAGGCACCGGCAAGACAATGCTGGCTAAGGCCATTGCGAAGGAGGCCGGGGCAAGTTTCATCAATGTGTCCATGTCCACCATCACTTCAAAATGGTTTGGCGAAGACGAGAAGAACGTTCGGGCTTTATTCACGCTTGCAGCCAAGGTGTCCCCCACCATTATATTTGTGGATGAGGTCGATAGCATGCTTGGCCAAAGGACTAGAGTTGGGGAGCACGAAGCCATGCGGAAAATCAAGAATGAATTTATGGCACATTGGGATGGCCTTATGACCAAACCAGGGGAGCGCATCCTTGTTCTTGCTGCAACCAATAGGCCATTTGACCTCGATGAAGCTATTATTAGGCGATTCGAAAGGAGAATTATGGTGGGGCTGCCATCTGTGGAGAATAGGGAGAAGATTCTGAGGACTTTATTGGCCAAAGAGAAGGTGGATGATGAACTTGACTTTAAGCAACTAGCAACTATGACAGAAGGATACACTGGGAGCGATATAAAGAATCTGTGCACAACTGCTGCATATCGGCCTGTGAGAGAGCTAATTCAGCAAGAGAGGCTCAAGACTCTGGAGCAAAAGCAGAAAGCGGTTACAACACGAGAAGGGAAAGAAGCAAGAGAAGAGAAGCAAGAAAGAGTGATTAGCCTTAGGGCATTGAATATGCAGGACTTGAAGGAGGCAAAGGCTCAGGTTGCTGCAAGCTTTGCGGCGGAGGGGGCTGGAATGAGCGAGTTGAAGCAGTGGAACGAGTTGTACGGAGAAGGCGGCTCAAGAAAGCAGCAGCACTTGACTTACTTTCTCTGA 2493 0.446 MEQKSILLSAIGVGVGVGVGLGLASGQGVGIWGATTYSSNAITAEKIEQEMLRQVVDGRESTVTFDKFPYYLSEQTRVLLTSAAYVHLKHAEVSKYTRNLAPASQTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSRYGFGNQESSFKRSTSESTLERLSDLFGSFSIFQQREEPKGRIHRQSSGADLQSMGTEASCNPPKLRRNASSSSNISTLGLQSNHTNPAPLKRTTSWSFDEKLLIQSLYKVLVFVSKTYPIVLYLRDVDKLIYRSQRIYNLFQKMLKKLSGPILILGSQVLDSSNDYEEVDDRLNSLFPYTIEVKPPDDESHLVSWKSQLEEDMKKIQVQDNKNHIMEVLAANDLVCEDLDSICVADTMVLSNYIEEIIVSALSYHLMKSKDLEYRNGKLVISCNSLSHALGIFHKGKLIGKNTSKLEDQAVKSEVPKGEESVTNPEAKSEDAAPVKKPGAEASKEEGEKSVASSKAAEVPPDNEFEKRIRPEVIPADEIDVKFSDIGALEETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMAHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLAKEKVDDELDFKQLATMTEGYTGSDIKNLCTTAAYRPVRELIQQERLKTLEQKQKAVTTREGKEAREEKQERVISLRALNMQDLKEAKAQVAASFAAEGAGMSELKQWNELYGEGGSRKQQHLTYFL* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3372 830 Gene3D - 46 356 IPR027417 -
Amo13g3372 830 Pfam AAA+ lid domain 712 752 IPR041569 -
Amo13g3372 830 ProSitePatterns AAA-protein family signature. 661 680 IPR003960 GO:0005524|GO:0016887
Amo13g3372 830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 352 IPR027417 -
Amo13g3372 830 Pfam ATPase family associated with various cellular activities (AAA) 558 688 IPR003959 GO:0005524|GO:0016887
Amo13g3372 830 Gene3D - 690 770 - -
Amo13g3372 830 MobiDBLite consensus disorder prediction 446 489 - -
Amo13g3372 830 MobiDBLite consensus disorder prediction 193 233 - -
Amo13g3372 830 MobiDBLite consensus disorder prediction 184 233 - -
Amo13g3372 830 SMART AAA_5 554 691 IPR003593 -
Amo13g3372 830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 757 IPR027417 -
Amo13g3372 830 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 830 - -
Amo13g3372 830 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 830 - -
Amo13g3372 830 MobiDBLite consensus disorder prediction 446 505 - -
Amo13g3372 830 CDD AAA 556 689 - -
Amo13g3372 830 Gene3D - 517 773 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3372 Amo-Chr13 111497604 111502374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3372 518 777 Calmodulin-binding Proteins AT3G56690 36.567 2.27e-43 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3372 - - gmx:100807464 1357.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3372 13 111497604 111502374 Amo13g3372 13 111497604 111502374 ECH
Amo05g2407 05 51475165 51480934 Amo13g3372 13 111497604 111502374 PCT