Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3351 ATGTTACATGTAAACCCACAATTTACAAATAAACGTAAACTGCTACAAGAGTCTCGCAGGATACGTTCGAAGCCAACTGCACATAATTTATGTATTAGTTATGTTAGAGGAGCCATCATCAGCGAAATCTGCAAAATCAAGCAGCTGAGTGAGTTGTACATAACTGAGAACAAGCTAATTTCTGGAGAGGTTCCAACTTGCTTTGGTAATCTTACTTCCCTAAGAAAATTTTACTTGAACTCTAACAAACTCAGTAAGGTGCCTTCTTCTCTTTGGAGCCTCATAGACATTCTTGAGGTGAACTTGTCTGACAATGCTTTAATTCTGTCTCTTCCAATTGAAATTGGGAACTTAAAGGCTGTGACTTTCTTGGATCTATCAAAGAATATGATCTCAGGAAGCATTCCTGGGGCCATTTCTGGATTGCAAAATTTGCAAATTCTCAACTTATCACAAAATAAATTGGTAGGGGGTATTCCTGATTCACTTGGCAGTTTGATAAGTTTGACAGATTTGGACTTATCTCAAAACAACTTGTTTGGCTTGATTCCAAGATCACTGGAGTCACTTCATTATCTTGAATTCATCAATCTTTCTCATAATAGTTTGGAAGGAGAGATTCCAAGTGGTGGACCTTTCAAAAATTTCACTGCTCAATCTTTCATGTTTAATAAAGCACTTTGTGGAAATGCCAGATTACAAGTCCCAGCATGCAGAGTTGAAGAAAGAATGGTGGTGATACTAATGAAGGAACATTATCAGCATTACCAGCATGTAGAATGCAAAGCAATGCGCAATCTGCGCCATCGAAATCTCATGAAGATCATAGGTTGTTGTTCAAGTATAGATTACAAGCTTTTAGTGATGGAGTTCATGCCTAATGGGAGCCTTGAGAGATGGTTGTATTCTCATAACCATTGTTTGGACTTCTTGCAAAGGCTAAATATAATGATAAATGTGGCATCTGCATTAGAGTATCTGCATCATGGATCTTCACCTATAGTGGTTCATTGTGATGTCAAACCTTGTAATGTCTTATTGGATGAAGACATGGTTGGCCATGTCAGTGACTTTGGCATTGCCAAATTGCTTGGCGAGGGACAATCCAAAGAATATACCAAGACCATGGCTACAGTTGGCTACATTGCACCGGAGTTTGGATCCAAATGGATTATCTCTACAAAGGGAGATGTATACAGTTTGGGGATAATGCTGATGGAAACATTCACAAGAAAGAAGCCAATAGATGACTTGTTTGTTGCAGGATTAAGCATGAAAGGTTGGATTAGTGAATCATTGTCACGAGCAATTGATCGAGTTGTGGATTCCAACTTTTTACAAGATGAAGGTCACCACCATGTTGATGACATAATAGCATCTACATCATCTATCTTGAAACCGGCCTTGAATTGTTGTGAGGATTTACCTGAAAAACGAATGAACATGACAGATATTGCTGCATCACTAAACAAAGTTAAGGCCAAGTTTTTTGAAGCTAGTGATAAGAATGTGGTTCGGTTTTGTAGAAAATGA 1533 0.3823 MLHVNPQFTNKRKLLQESRRIRSKPTAHNLCISYVRGAIISEICKIKQLSELYITENKLISGEVPTCFGNLTSLRKFYLNSNKLSKVPSSLWSLIDILEVNLSDNALILSLPIEIGNLKAVTFLDLSKNMISGSIPGAISGLQNLQILNLSQNKLVGGIPDSLGSLISLTDLDLSQNNLFGLIPRSLESLHYLEFINLSHNSLEGEIPSGGPFKNFTAQSFMFNKALCGNARLQVPACRVEERMVVILMKEHYQHYQHVECKAMRNLRHRNLMKIIGCCSSIDYKLLVMEFMPNGSLERWLYSHNHCLDFLQRLNIMINVASALEYLHHGSSPIVVHCDVKPCNVLLDEDMVGHVSDFGIAKLLGEGQSKEYTKTMATVGYIAPEFGSKWIISTKGDVYSLGIMLMETFTRKKPIDDLFVAGLSMKGWISESLSRAIDRVVDSNFLQDEGHHHVDDIIASTSSILKPALNCCEDLPEKRMNMTDIAASLNKVKAKFFEASDKNVVRFCRK* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3351 510 Pfam Protein kinase domain 258 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3351 510 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 35 242 - -
Amo13g3351 510 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 258 499 - -
Amo13g3351 510 PRINTS Leucine-rich repeat signature 142 155 - -
Amo13g3351 510 PRINTS Leucine-rich repeat signature 121 134 - -
Amo13g3351 510 Pfam Leucine Rich Repeat 168 190 IPR001611 GO:0005515
Amo13g3351 510 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 35 242 - -
Amo13g3351 510 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 258 499 - -
Amo13g3351 510 SMART LRR_typ_2 166 189 IPR003591 -
Amo13g3351 510 SMART LRR_typ_2 118 141 IPR003591 -
Amo13g3351 510 SMART LRR_typ_2 71 94 IPR003591 -
Amo13g3351 510 SMART LRR_typ_2 142 165 IPR003591 -
Amo13g3351 510 Pfam Leucine rich repeat 100 155 IPR001611 GO:0005515
Amo13g3351 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
Amo13g3351 510 SUPERFAMILY Protein kinase-like (PK-like) 247 489 IPR011009 -
Amo13g3351 510 SMART serkin_6 238 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3351 510 SUPERFAMILY L domain-like 30 229 - -
Amo13g3351 510 Gene3D Transferase(Phosphotransferase) domain 1 296 507 - -
Amo13g3351 510 Gene3D Phosphorylase Kinase; domain 1 237 295 - -
Amo13g3351 510 ProSiteProfiles Protein kinase domain profile. 201 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3351 510 Gene3D Ribonuclease Inhibitor 27 236 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3351 Amo-Chr13 109724270 109728642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3351 259 500 Receptor kinase-like Gene Family AT3G47570 38.550 3.18e-53 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo13g3351 Pkinase 4.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3351 - K04733 ahf:112754658 498.819