Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3350 ATGCTCCTTCGTGACGCACCGTTTGGGATTGTTACTCAATCTCCTAATATCAAGGATCTTGTCAAGTGTGATGGGGCTGCCCTTACTCACGGCAACTCAACCGGTTTGAGTACAGACAGTTTGGCTGATGCTGGTTATCCTGGTGCTGCTTTTCTTGGGGATGCAGTGTGTGGCATGGCGATGGTGCGAATCAGTTCGAGGCATTTCTTGTTCTGGTTCCGGTCTCACACTGCTAAGGAAGTTAAAGATTCATTTCACAATTCAGAGAATAGTGGTATTAAGGCTATGAACTACATATACAGAAGTGATGCTGGGATTGATGAGCTAAGTTCGGTAGCATTTGAAATGGTGAGGTTAATTGAGACGGCAACTGTGCCGATTTTCGGGGTTGACACAGGTGGCCTAATCAATGGTTGGAATGTGAAAATTACGGAATTGACAGGTTTGCTGGCAAATGAAGCTATTGGAAAATCACTAGTGAATGAAGTAGCGCATGCAGACTCGCGCAACAATCTTGAAAATATTCAAAGTAAATCACTGCAAGGCTTGGAAGACAAGAATTTTGAGTTGAAATTAAAACACTTTGGGAACAACACAAAATGGAGTTGTATATCTCATAGTGAATGCTTGCACAAGGAGAGATTACACAAATGCTGTTGTTGGGGTATGCTTTGTAGGCCAAGATACCACTTGTGA 696 0.4296 MLLRDAPFGIVTQSPNIKDLVKCDGAALTHGNSTGLSTDSLADAGYPGAAFLGDAVCGMAMVRISSRHFLFWFRSHTAKEVKDSFHNSENSGIKAMNYIYRSDAGIDELSSVAFEMVRLIETATVPIFGVDTGGLINGWNVKITELTGLLANEAIGKSLVNEVAHADSRNNLENIQSKSLQGLEDKNFELKLKHFGNNTKWSCISHSECLHKERLHKCCCWGMLCRPRYHL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3350 231 CDD PAS 123 194 IPR000014 -
Amo13g3350 231 ProSiteProfiles PAS repeat profile. 112 183 IPR000014 -
Amo13g3350 231 PANTHER PHYTOCHROME C 97 203 - -
Amo13g3350 231 PANTHER PHYTOCHROME C 29 89 - -
Amo13g3350 231 TIGRFAM sensory_box: PAS domain S-box protein 119 185 IPR000014 -
Amo13g3350 231 Pfam PAS fold 115 204 IPR013767 GO:0006355
Amo13g3350 231 Pfam Phytochrome region 32 82 IPR013515 GO:0006355|GO:0009584
Amo13g3350 231 SUPERFAMILY PYP-like sensor domain (PAS domain) 118 206 IPR035965 -
Amo13g3350 231 Gene3D PAS domain 107 210 - -
Amo13g3350 231 Gene3D - 32 97 IPR043150 -
Amo13g3350 231 PANTHER TWO-COMPONENT HISTIDINE KINASE 29 89 - -
Amo13g3350 231 SUPERFAMILY GAF domain-like 1 82 - -
Amo13g3350 231 PANTHER TWO-COMPONENT HISTIDINE KINASE 97 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3350 Amo-Chr13 109636699 109639156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3350 1 195 Histidine Kinase Gene Family AT2G18790 43.972 1.17e-63 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3350 K12123 - gmx:100800339 265.003