Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo13g3348 | ATGGCATTCAGCGGGACACAACAGAAATGTAAGGCTTGTGACAAAGTTGTTCATTTCGTTGAATCCCAATCTGCAGATGGCGCTATTTATCACAAGAACTGCTTCAGATGCAGCCACTGCAATGGCCGTCTCGCGATAAGCAACTACTCATCGATTGAGGGAGTTTTATATTGCAAGCCTCACTTTGAGCAACTTTTTAAGGAAAATGGTGCTACCTTGATGAGGAGATCGCTGTCATCTGGAAAGCAACAACAGCCTGATGTGCCCAAGAAACAACCAAGCAGACTGGCCTCCTTCTTCTCTGGGACTCAGGATAAATGTTCAGTTTGTAAGAAAACTGTCTATCCATTGGAAAAGTTAACTGTGGAAGGGGAGTTTTTCCACAAATCATGCTTTAAGTGCACACATGGAGGGTGTTCCCTGAACCCTTCATCGTATGCAGCATTGGATGGATTCCTTTATTGCAAGCCGCATTTCTCTCAGCTCTTCAAAGAGAAAGGTAGCTACAGCCATCTCTCCAAGACAGCTTCCCTGAGGAAGCAGCAAGAAGAAGACAAGGCCGACAAAGCCGACACAACGGAAGACACAGACCCGGCCGCCGCACCGGCATCGGCAGAGGCAGCAGCTGAAGCTGAGGATGCTCCCGTCACACCGCAAGATCAGTAA | 666 | 0.479 | MAFSGTQQKCKACDKVVHFVESQSADGAIYHKNCFRCSHCNGRLAISNYSSIEGVLYCKPHFEQLFKENGATLMRRSLSSGKQQQPDVPKKQPSRLASFFSGTQDKCSVCKKTVYPLEKLTVEGEFFHKSCFKCTHGGCSLNPSSYAALDGFLYCKPHFSQLFKEKGSYSHLSKTASLRKQQEEDKADKADTTEDTDPAAAPASAEAAAEAEDAPVTPQDQ* | 222 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo13g3348 | 221 | PANTHER | OS06G0237300 PROTEIN | 1 | 210 | IPR045268 | GO:0051015 | |
| Amo13g3348 | 221 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Amo13g3348 | 221 | ProSiteProfiles | LIM domain profile. | 105 | 165 | IPR001781 | - | |
| Amo13g3348 | 221 | PANTHER | GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 210 | - | - | |
| Amo13g3348 | 221 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 71 | - | - | |
| Amo13g3348 | 221 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Amo13g3348 | 221 | MobiDBLite | consensus disorder prediction | 177 | 195 | - | - | |
| Amo13g3348 | 221 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Amo13g3348 | 221 | Pfam | LIM domain | 107 | 162 | IPR001781 | - | |
| Amo13g3348 | 221 | SMART | lim_4 | 106 | 158 | IPR001781 | - | |
| Amo13g3348 | 221 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Amo13g3348 | 221 | Gene3D | Cysteine Rich Protein | 4 | 72 | - | - | |
| Amo13g3348 | 221 | Gene3D | Cysteine Rich Protein | 101 | 171 | - | - | |
| Amo13g3348 | 221 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Amo13g3348 | 221 | MobiDBLite | consensus disorder prediction | 173 | 221 | - | - | |
| Amo13g3348 | 221 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 99 | 132 | - | - | |
| Amo13g3348 | 221 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Amo13g3348 | 221 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 133 | 172 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo13g3348 | Amo-Chr13 | 109583628 | 109585932 | Dispersed/Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Amo13g3348 | LIM | 1.7e-10 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo13g3348 | - | K24413 | gmx:100499865 | 293.123 |