Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3336 ATGTGCTCAAACCCCGATGTTTCTTCTCCTGCACCTGCACCTGCACCTGCACCTGGAGATGGACCTTCAACAACTCATTTGCGCCCTAGGTCTCAGCTTCAATCTGGTTCTGGTTCTGGTTCTGGTGGTGCCTGCAGTGGGACTGGTGAAGTTCAAATTCGCATAATTGGTACTGGGGACCAAGACAACAATGATGTGATTGGTTCGGTTTCCTCTTCTTCGCAGCTGAGTCGTGTGTCTCGATCGGGCCATCATGAGTGTATTATGGTCAACGGACGGCCGTGGCCGCCGCCGAACATTACCGACCCTGAGACTCGGCACCGGCTGATTCAGGACCCGCCTGTGTACGAGACACCTGCGTCTGAGGTGTATGAGCTTCTTGGTAGTGGTAATAGGAATGTTCAGCAGGCTGTTAAGTGGCTGGAACAGCTTATCCCTTTCTCCCTCTTGCTGTTGGTGGTGTTCATTCGCCAGCATTTGCAAGGTTTCTTTCTCACAATTTATGTATCAGCTGTGCTGCTTAAATCAAATGAGGTGGTTAAGGAACAGACAGCTCTAAAGGGAGATCGGAAAGTCTCTGTTCTTGTTGGTATCTCAGTTGCCTTCATGCTCCACGTGATAGCCGTTTACTGGTTTCAAAATGATGATCTTTTATACCCAATTGCAATGCTTCCTCCAAAAGAAACACCGCTTTTCTGGCATGCAATATTCACCGTTTTGATCAATGATACATTGGTGCGGCAAGCAGCAATGGCTTTCAAGCTTTTGGTGCTAATTTTCTACAAATGTCGCAGAGGCCCCAGCTTCCGTCGGCAGGGTCAAATCTTAACTGCGGTTGAGTACGTGTTGCTGTTGTATCGTGCCTTGCTGCCAACACCAGTTTGGTATCGGTTTTTCTTGAACCATGATTATGGAAGTCTCTTTTCATCACTGACCACAGGGTTGTATCTAACATTCAAACTAACGACTTTAGTTGAGAAGATCCAAAACTTCTTTTCTGCCTTAAGACTATTATCGGGAAGGAAAGTCCAATATGGGGTTTATGCTACAAAGGAACAGGTAAAGTCTGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCGAGCTCCGCTCTTGTTGCACTGTAAACACTTGTTCTGTGAGGAATGTGTGTCCGAATGGCTTGAGCGAGAAAGGACTTGCCCATTATGCAGAGCAAATGTAAAATCTGCTGATCTGCTCACCTATGGAGATGGTTCGACAAGTATTTTGTGTCAGTTGTTTTAA 1269 0.4665 MCSNPDVSSPAPAPAPAPGDGPSTTHLRPRSQLQSGSGSGSGGACSGTGEVQIRIIGTGDQDNNDVIGSVSSSSQLSRVSRSGHHECIMVNGRPWPPPNITDPETRHRLIQDPPVYETPASEVYELLGSGNRNVQQAVKWLEQLIPFSLLLLVVFIRQHLQGFFLTIYVSAVLLKSNEVVKEQTALKGDRKVSVLVGISVAFMLHVIAVYWFQNDDLLYPIAMLPPKETPLFWHAIFTVLINDTLVRQAAMAFKLLVLIFYKCRRGPSFRRQGQILTAVEYVLLLYRALLPTPVWYRFFLNHDYGSLFSSLTTGLYLTFKLTTLVEKIQNFFSALRLLSGRKVQYGVYATKEQVKSAGDMCAICQEKMRAPLLLHCKHLFCEECVSEWLERERTCPLCRANVKSADLLTYGDGSTSILCQLF* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3336 422 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 33 422 IPR044235 GO:0061630|GO:1904294
Amo13g3336 422 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 33 422 - -
Amo13g3336 422 MobiDBLite consensus disorder prediction 57 76 - -
Amo13g3336 422 CDD RING-HC_RNFT1_like 360 399 - -
Amo13g3336 422 Pfam Zinc finger, C3HC4 type (RING finger) 359 404 - -
Amo13g3336 422 MobiDBLite consensus disorder prediction 1 48 - -
Amo13g3336 422 ProSitePatterns Zinc finger RING-type signature. 376 385 IPR017907 -
Amo13g3336 422 SUPERFAMILY RING/U-box 354 404 - -
Amo13g3336 422 MobiDBLite consensus disorder prediction 25 46 - -
Amo13g3336 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 408 IPR013083 -
Amo13g3336 422 SMART ring_2 361 398 IPR001841 -
Amo13g3336 422 ProSiteProfiles Zinc finger RING-type profile. 361 399 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3336 Amo-Chr13 109265561 109269856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3336 48 422 C3H Transcription Factor Family AT5G01960 57.560 4.76e-160 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3336 - K22379 gmx:100784614 478.018