Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3333 ATGTCTTTAGAAAGATCAGAAGTGATTAGAGCTGTAATTGTACGTACTTGTAAAGAACTTAAACGTAGCAATGGCATGATAATACARTATGATGATAATGCCRCGGTTGTCATTGATCAAGAGGAAAATCCAAAAGGAACTCGAATTTTTGGCGCAATCGCCCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCTGAGATAAATTATAAATAA 228 0.3377 MSLERSEVIRAVIVRTCKELKRSNGMIIQYDDNAXVVIDQEENPKGTRIFGAIARELRQLNFTKIVSLAPEINYK* 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3333 75 ProSitePatterns Ribosomal protein L14 signature. 11 37 IPR019972 -
Amo13g3333 75 SUPERFAMILY Ribosomal protein L14 2 72 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo13g3333 75 SMART Ribosomal_L14_2 1 73 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo13g3333 75 Gene3D Ribosomal protein L14 1 73 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo13g3333 75 Pfam Ribosomal protein L14p/L23e 3 72 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo13g3333 75 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 72 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo13g3333 75 PANTHER RIBOSOMAL PROTEIN L14B/L23E-RELATED 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3333 Amo-Chr13 108772028 108772301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3333 5 69 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.923 2.59e-08 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3333 K02874 - csin:14412462 131.339