Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3309 ATGACCTCCATTTTGCATAACCGTCCAAATGACGCAATTATCCTTCTCTCCTTTCTTCTCTTTCACCTGCTTCTCTTCTTTCCCTTCACCGGAGCACAATCCGATAACAACAACCAAAACAACAATTACTACAACCGTTTCAGCCCTTCCATGGCGATCATAGTTGTAATCCTCGTCTCCGCACTCTTCCTCATGGGATTCTTCTCCATCTACATCCGCCACTGCTCCGACTCTCCTTCCGCCAGCATCCGCCACCTTGTCGCCACCGGCAGATCCCGCCGTGGTCACCGAGGTCTCGACCCTGCCGTCATCGACTCGTTCCCAACCTTAGAGTACTCAGTCGTAAAAATCCACAAGATTGGAAAGGGAGCACTCGAATGCGCAGTGTGCCTCAACGAGTTTGAAGACACTGAAACGCTGCGTTTGATTCCCAAATGCGACCACGTGTTCCACCCTGAGTGTATCGACGAGTGGCTCGAGTCTCACACCACGTGTCCGGTTTGCAGAGCCGACCTCCTCCCACAACCGGGAGACTCCGTACGCGGCGCCGCCGCCGTCGTGATTCCGGAGTTGGCAAACGACGAGTTGTCCTCGCCGCGCAATTTGGAATCGCGGAACCAAAGCGACGTCGTAGTTGCTGTGGAGCAAGAAAGTGAGAATCTGGAGAGTAATAAGAATGAAAGGGTAAGTGTTGATGAACGGGAAGTATTGTGTTTGAATATGAACCAGGCGTTGAATTTGAACCGCACCAGGGGTTCCCGGTCGGGGAGGCCGAGGAGGAAGAAGATTCTAGAACCTCAGTTGAACCGAGCGAGGAGCTTGGTTATTTTGCCGAGAGAAGGGAGCTCAAAGAGGGGTTACCGAACTGGGGGCGGAGAAGGAAGTAGTAGGGGCTGGTCTACAAGGCGGTTAGACCGGGTTTTTAAGTCGGACCGGTGGATTTTCACTATGGCGCCACCGTTTCTCGTTAGGGCGTCGTCAATTAAGTCACCACGGGTGGCTAATAGCGCCGGCGGCGGAAGTTCATCGGCTGCTCCAGCAGCTGCACCACCAGTTCTGACTGCACCAACAGCAACATCAGAAATAGACCATCTACCGGTTTAA 1104 0.5326 MTSILHNRPNDAIILLSFLLFHLLLFFPFTGAQSDNNNQNNNYYNRFSPSMAIIVVILVSALFLMGFFSIYIRHCSDSPSASIRHLVATGRSRRGHRGLDPAVIDSFPTLEYSVVKIHKIGKGALECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLESHTTCPVCRADLLPQPGDSVRGAAAVVIPELANDELSSPRNLESRNQSDVVVAVEQESENLESNKNERVSVDEREVLCLNMNQALNLNRTRGSRSGRPRRKKILEPQLNRARSLVILPREGSSKRGYRTGGGEGSSRGWSTRRLDRVFKSDRWIFTMAPPFLVRASSIKSPRVANSAGGGSSSAAPAAAPPVLTAPTATSEIDHLPV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3309 367 MobiDBLite consensus disorder prediction 332 367 - -
Amo13g3309 367 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Amo13g3309 367 SUPERFAMILY RING/U-box 121 176 - -
Amo13g3309 367 PANTHER RING FINGER DOMAIN-CONTAINING 14 260 - -
Amo13g3309 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 174 IPR013083 -
Amo13g3309 367 CDD RING-H2_EL5_like 126 169 - -
Amo13g3309 367 MobiDBLite consensus disorder prediction 279 299 - -
Amo13g3309 367 Pfam Ring finger domain 126 169 IPR001841 -
Amo13g3309 367 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 260 - -
Amo13g3309 367 SMART ring_2 127 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3309 Amo-Chr13 105957269 105958462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3309 12 346 Rapid Response to Elicitors AT3G05200 40.290 1.13e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3309 K10664 - gmx:100810865 395.201