Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3306 ATGGCTGACACTGCTGCAGAAGTTCCCACAAGGAGGTCAAGGAGCAAAAGGGCTCTCAAGGACAAAAACTCGTCAACAAATGAGTCCGCAAACACCATCACCACCAAGGTCTCAGAATTCACACCTCCAATTTCTGAACAAGTGATAATGAAGGAGAACCTCGACACCACCACCACCGTTTCTCAACCCAAGAAAGGAAGAGCTGCTTCAAAGAAACAAAGCACGAAGCAGCAGCAGCAGCAATCTCCTTCTTTTGAGAAAGAGTTGCTTGAGATGCAGGAGAAGCTGCAGCAGCTGCACCTCGAGAAGGAGAAAACCGAGGAGCTCTTAAAAGCCAAGGATGAGGCCCTCAAGCTCAAGGACCAAGAGCTTGAAAACCGAGGCAAGGAACAGGAGAAGCTCCAGACCGAGCTCAAGAAGCTCCAGAAGTTGAAGGAGTTCAAACCCACCATGAACTTGCCTCTTCCGAAAGATAAGGAACAAGACAAGAAGGACAAGAAGAAAAGGCCCTCTGCTCCTTACATTCTGTGGTGCAAGGATCAATGGAATGAGATCAAGAAAACAAACTCAGAGGCAGAATTCAAGGACATCTCAAACATGTTGGGGGCTAAATGGAAGACAGTTAGCGCTGAAGAGAAGAAGCCGTACGAAGAGAAGTACAATGCTGAAAAAGAAGCATATATGGAGGTAATGGCGAAGGAAAAGCGCGAGACGGAGGCACTGAAGCTGTTGGAAGAGGATCAGAAGCAGAAGATGGCGATGGAGCTTCTTGAACAGTACATGCAGTTCAGACAAGAAGCAGAGAAAGAGACTACAAAGAAGAACAAGAAAGAGAAGGATCCATTGAAGCCAAAGCACCCGATGTCAGCATATATCCTTTTCACAAACGATAGGCGTGCGGCTCTTGTTGCGGAGAACAAGAGCGTTGTGGAAGTTGCGAAGATCACAGGGGAAGAGTGGAAGAACATGACGGAGGAACAGAAGAGGCCTTACGAGGAGATGGCGAATAAGAAGAAGGAGCAGTATGTTCAAGAAATGGAAGCTTATAAGCAGAGGAAACATGAAGAGGCTGCAAATCTCATGAAGGAAGAGGAGGAGCACATGAAGCTTCAGAAGCAGGAAGCGTTGCAGCTCCTCAAGAAGAAAGAGAAAACTGAAATCCTCATCAAGAAAACAAAGCAGAAGAAGAAGCAGAACAAGGAAGATAAGAATTCTGACCCAAACAGGCCTAAGAGGCCTCCATCCTCATTCCTCTTATTCAGCAAGGAAGCAAGGAAAGCTTTACAGGAGGAACGTCCAGGAATCAACATTTCCACCCTTAATGCACTCATTTCATTGAAGTGGCAGGAACTGAGCGAGGAAGAGAGACAAATATGGAATGGGAAAGCAAGTGAAGCAATGGAAGTGTACAAGAAGGAATTGGAGGAATACAACAAAACCATTGCTACTTCAACTGAAGAATGA 1464 0.4604 MADTAAEVPTRRSRSKRALKDKNSSTNESANTITTKVSEFTPPISEQVIMKENLDTTTTVSQPKKGRAASKKQSTKQQQQQSPSFEKELLEMQEKLQQLHLEKEKTEELLKAKDEALKLKDQELENRGKEQEKLQTELKKLQKLKEFKPTMNLPLPKDKEQDKKDKKKRPSAPYILWCKDQWNEIKKTNSEAEFKDISNMLGAKWKTVSAEEKKPYEEKYNAEKEAYMEVMAKEKRETEALKLLEEDQKQKMAMELLEQYMQFRQEAEKETTKKNKKEKDPLKPKHPMSAYILFTNDRRAALVAENKSVVEVAKITGEEWKNMTEEQKRPYEEMANKKKEQYVQEMEAYKQRKHEEAANLMKEEEEHMKLQKQEALQLLKKKEKTEILIKKTKQKKKQNKEDKNSDPNRPKRPPSSFLLFSKEARKALQEERPGINISTLNALISLKWQELSEEERQIWNGKASEAMEVYKKELEEYNKTIATSTEE* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3306 487 MobiDBLite consensus disorder prediction 141 170 - -
Amo13g3306 487 Coils Coil 332 402 - -
Amo13g3306 487 MobiDBLite consensus disorder prediction 263 289 - -
Amo13g3306 487 SMART hmgende2 409 479 IPR009071 -
Amo13g3306 487 SMART hmgende2 283 351 IPR009071 -
Amo13g3306 487 SMART hmgende2 166 236 IPR009071 -
Amo13g3306 487 Pfam HMG (high mobility group) box 410 478 IPR009071 -
Amo13g3306 487 Pfam HMG (high mobility group) box 168 232 IPR009071 -
Amo13g3306 487 Pfam HMG (high mobility group) box 284 350 IPR009071 -
Amo13g3306 487 MobiDBLite consensus disorder prediction 24 42 - -
Amo13g3306 487 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 167 235 IPR009071 -
Amo13g3306 487 CDD HMGB-UBF_HMG-box 169 232 - -
Amo13g3306 487 Coils Coil 217 237 - -
Amo13g3306 487 CDD HMGB-UBF_HMG-box 284 347 - -
Amo13g3306 487 MobiDBLite consensus disorder prediction 50 87 - -
Amo13g3306 487 SUPERFAMILY HMG-box 154 232 IPR036910 -
Amo13g3306 487 Coils Coil 253 280 - -
Amo13g3306 487 MobiDBLite consensus disorder prediction 9 23 - -
Amo13g3306 487 MobiDBLite consensus disorder prediction 263 285 - -
Amo13g3306 487 Gene3D High mobility group box domain 389 486 IPR036910 -
Amo13g3306 487 Gene3D High mobility group box domain 267 365 IPR036910 -
Amo13g3306 487 SUPERFAMILY HMG-box 405 480 IPR036910 -
Amo13g3306 487 Coils Coil 89 144 - -
Amo13g3306 487 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 485 IPR044601 GO:0003677
Amo13g3306 487 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 410 478 IPR009071 -
Amo13g3306 487 MobiDBLite consensus disorder prediction 1 88 - -
Amo13g3306 487 Gene3D High mobility group box domain 161 243 IPR036910 -
Amo13g3306 487 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 284 350 IPR009071 -
Amo13g3306 487 Coils Coil 460 487 - -
Amo13g3306 487 MobiDBLite consensus disorder prediction 387 418 - -
Amo13g3306 487 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 485 - -
Amo13g3306 487 CDD HMGB-UBF_HMG-box 410 475 - -
Amo13g3306 487 SUPERFAMILY HMG-box 272 357 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3306 Amo-Chr13 105703543 105705525 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Amo13g3306 HMG_box 1.6e-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3306 K09273 - gmx:100783033 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3306 13 105703543 105705525 Amo13g3306 13 105703543 105705525 ECH
Amo13g3306 13 105703543 105705525 Amo03g2316 03 96801579 96803342 hybridization