Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3295 ATGGAAAATGATGGGCGCTGGGAGCAGAACATACTCATCAACGAGCTAGTTCAGGGGATGGAGGTAGCAAGAAGGTTGAAGGAAGACATGAATGCGACATATTCAGCAGACACAAAAGATTTGTTGCTGCAGAGGATATTATCTTCGTATGAAAAAGCTCTGCTAATTCTAAGATGGAATGCATCAACTTCCAAGTCTCAGAACATGAGTCAAGCAACAGCAACCTTGTTTTCAGAGTCACCAATATCTATCAGCGCAAGTCCTCTGCGGGATGACAAGGATCATAATCAAGAGTTTAAACACGATTCAAAGAAAAGAAAGACAATGGCCAAATGGGTAGATCAAGTGAGAGTGAGCTTTGAGAGTGGCCTTGAAGGACCACATGAAGATGGTTACAACTGGAGAAAATATGGACAGAAAGATATCCTTGGTGCCAAATATCCCAGAAGTTATTATAGGTGCACCTTCCGGAACACTCAGGGGTGCTGGGCCACGAAGCAAGTACAGAGATCAGACGAAGATCCTACCATATTTGACATAACTTACAAAGGAAGGCATACCTGTTCTCAGGGAAACAAGGCTGTTCCGCAACCGAAATCGCCAGACAAACATGAGKAACTGCAATGTCATAGTAACGAAATTCAGCATAGACAAACATCAGAAGAAAGCCTGACAACTTTCGGGACCATTATGACAGTTAAAAGAGATATGGTGGSAAATGGAGAGATGGAATATCCTTTCACTTTCCCTTCAACTTCATTTGGAAGCATGGCACAAGAAAGCTACAGCTTGATTCCTTCAYCCCTGGAGAACGAATCCTTCRTGAGCAGRCATTTCCAAACTCACTTATTATATCCAAACATGCAAGAATTTAAATACCTGCCATCTACGTCTTTCCAGATGAATGAGCTTGATGGGATCTATAATAGGCCYCTTTCAGAATCAGATATTACTGAGATCATTTCCACCAACACATCCACCACCAATTCTCCAGTTCCGGAGTTCAATTTCTCACTTGATCCAGTGGAAATTGATCCAAATTTCCCTCCCAATACCCTGGATTTTTCTCCTAGAGCCCTTATCAACAAGAACATCTAG 1098 0.4199 MENDGRWEQNILINELVQGMEVARRLKEDMNATYSADTKDLLLQRILSSYEKALLILRWNASTSKSQNMSQATATLFSESPISISASPLRDDKDHNQEFKHDSKKRKTMAKWVDQVRVSFESGLEGPHEDGYNWRKYGQKDILGAKYPRSYYRCTFRNTQGCWATKQVQRSDEDPTIFDITYKGRHTCSQGNKAVPQPKSPDKHEXLQCHSNEIQHRQTSEESLTTFGTIMTVKRDMVXNGEMEYPFTFPSTSFGSMAQESYSLIPSXLENESFXSRHFQTHLLYPNMQEFKYLPSTSFQMNELDGIYNRPLSESDITEIISTNTSTTNSPVPEFNFSLDPVEIDPNFPPNTLDFSPRALINKNI* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3295 365 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g3295 365 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 352 IPR044810 GO:0003700
Amo13g3295 365 SUPERFAMILY WRKY DNA-binding domain 127 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo13g3295 365 Gene3D WRKY domain 114 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo13g3295 365 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g3295 365 ProSiteProfiles WRKY domain profile. 123 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g3295 365 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3295 Amo-Chr13 105378051 105381486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3295 7 349 WRKY Transcription Factor Family AT4G11070 36.338 1.63e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo13g3295 WRKY 8.7e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3295 - - adu:107480050 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3295 13 105378051 105381486 Amo03g2312 03 96719857 96721157 hybridization
Amo05g2380 05 51076375 51077592 Amo13g3295 13 105378051 105381486 PCT