Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3274 ATGGCTACCGTGCCGCCATGTATATTATTCCTCTTCTTGGTGGCGCTAACAAGCATAGGCATAGCAAAGGCTCAGTTCTACTGCGAAAGCATATCATGCGGGAAGGGAGGAGTTTCAATTGAGTTCCCGTTTTACCTGAGAGAAAATCAAATCCCTGGATGTGGCTACCCAGGGTTCGAGCTCTCATGCGCCAACACCACCACGGAGCCCTTGCTGACTCTCCCAGCTGAACCAGGTCACTTCACTGTGAAACTCATCTCCTTAGAAGACCAACAAGTTTGGATCAACGACCCTCAGGAATGCCTCCCAAAGCGTTTGATGCGTGAGCGTGGCCTCAACCTCCAACTCTCACCCTTCCAATTAAGCTCTGCTTACTCGCTTGTCAACTACACCTTCCTCAGATGCCCTTCAAATTTAACCGCTTTGTCTATGGTACAACCAATACCCTGTTTGAACTCAGGGTTTAATAGTAGTAGCAAATCTTCGGTGGTGGCGATCTTGTCGAATCCGCCGTTTCCAACGCCGTGGACGTCGCCGTGCCACGTCATATCGTGGGCTATGATCCCGGTTGCCGGTTTTCCGTGGCCGTTTTGGACGGATTATTATTCTGACATAAAGTTGGAATGGGATAACCCAAATTGCGGAAGTTGCGAGGCACGTGGAGGACGGTGTGGGTTCGTTGGCCCAACGCTCCGGGACACTGCTTTTCATGTTGGTTGTTACGATCTTCCCACTCAACTTCAAGGTCTTTCAAAGAAAACCAAGTACGGTTTAGGTATGGGCCTAGGAATACCTGGAGCCTTGTGTATTATTGTGCTTGCATATTTGTTCTACGCCAAGATGAAGACACATGAGCAACAGAGGCTATCAAGAAGTGATTTTTCGACCATAATTTTACCGCGTCTTCCTGTTCAAATCATGGGATTGGATGCTGCTAGCATAGAAAAATACCCCAAAACCCTGCTTGGTGAAAGTGGGCGATTGCCTAAGCCTAATGACAATCTTTGTTCCATATGTCTCTGTGAGTACCAGCCCAAGGAGACCTTGAGGACCATACCTGAATGCAATCACTATTTTCATGCCAATTGCATAGATGGATGGCTCAAGATGAATGCTACTTGTCCTCTTTGTCGCAATTTACCTGAAAGATCTGTTGCATCATTAACCCCGTCTATACCTGCATCTCCCACTTATTAG 1197 0.4754 MATVPPCILFLFLVALTSIGIAKAQFYCESISCGKGGVSIEFPFYLRENQIPGCGYPGFELSCANTTTEPLLTLPAEPGHFTVKLISLEDQQVWINDPQECLPKRLMRERGLNLQLSPFQLSSAYSLVNYTFLRCPSNLTALSMVQPIPCLNSGFNSSSKSSVVAILSNPPFPTPWTSPCHVISWAMIPVAGFPWPFWTDYYSDIKLEWDNPNCGSCEARGGRCGFVGPTLRDTAFHVGCYDLPTQLQGLSKKTKYGLGMGLGIPGALCIIVLAYLFYAKMKTHEQQRLSRSDFSTIILPRLPVQIMGLDAASIEKYPKTLLGESGRLPKPNDNLCSICLCEYQPKETLRTIPECNHYFHANCIDGWLKMNATCPLCRNLPERSVASLTPSIPASPTY* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3274 398 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247
Amo13g3274 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 382 IPR013083 -
Amo13g3274 398 ProSiteProfiles Zinc finger RING-type profile. 336 378 IPR001841 -
Amo13g3274 398 SMART ring_2 336 377 IPR001841 -
Amo13g3274 398 SUPERFAMILY RING/U-box 331 380 - -
Amo13g3274 398 Pfam Ring finger domain 335 378 IPR001841 -
Amo13g3274 398 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 10 395 - -
Amo13g3274 398 CDD RING-H2_PA-TM-RING 336 378 - -
Amo13g3274 398 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3274 Amo-Chr13 104222734 104224268 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3274 28 381 C3H Transcription Factor Family AT2G46495 34.167 8.92e-56 185