Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3270 ATGCCTAGTGACAACACTGGAAACTCGGTCATAGTCTTAGGGCTGCGTCCTATTGACACGTCATCAACGTGTGACGTGATATCCACGGCTCTTGTGCCGCTTCCGATGGTGGATATGCCTCAGTGGCCATTCTGGCCTGATCTCAACCACGATATTGGCTTGGCTTGGACCCAACCTAGGTGCTCCCAATGTGCGGTTAGTGGCCAACGTTGTGGCTTCGTCAACGATAAAACTTCTCGAGTTGGATGCTTTTCTACTCCCACCAAAAACCAAGGTCTTAGCAGCAGTGCCAAATATGGCTTAACCTTAGGAGTGGGAGTTCCCGGGCTCTTATGTTTAATTGGGCTTTCATGCTTCATTTGCGGTAAGGTCAAGGTTCATATTCATCGCCGACAGCCCATCAGAGAGTTCCCAACAATTTCCCTACAGCCTATTACTCTTGCAATGGGCCTTGATAGGACCACAATTGAAAAGTACCCAAAGACTCTTATCGGTGAGAGCGGGCGCTTGTTGAAGCCCACTGATAATACCTGCTCAATATGCCTCTGTGAATATGAGCCTAAAGATACTTTGAGGACCATACCTGAGTGCAACCATTATTTCCATGCTGAGTGCATAGACGAGTGGCTCAGAATGAATGGAACCTGCCCCTTGTGCAGGAACACACCGGGGGCATTATCTAGAGTTAACCCTTCTTTCTCTTCTTTGTCTCATCACACTTCATCAATGTCCTCTACGCCATAA 744 0.4798 MPSDNTGNSVIVLGLRPIDTSSTCDVISTALVPLPMVDMPQWPFWPDLNHDIGLAWTQPRCSQCAVSGQRCGFVNDKTSRVGCFSTPTKNQGLSSSAKYGLTLGVGVPGLLCLIGLSCFICGKVKVHIHRRQPIREFPTISLQPITLAMGLDRTTIEKYPKTLIGESGRLLKPTDNTCSICLCEYEPKDTLRTIPECNHYFHAECIDEWLRMNGTCPLCRNTPGALSRVNPSFSSLSHHTSSMSSTP* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3270 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 246 - -
Amo13g3270 247 Pfam Ring finger domain 176 220 IPR001841 -
Amo13g3270 247 ProSiteProfiles Zinc finger RING-type profile. 178 220 IPR001841 -
Amo13g3270 247 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 246 - -
Amo13g3270 247 SUPERFAMILY RING/U-box 177 223 - -
Amo13g3270 247 SMART ring_2 178 219 IPR001841 -
Amo13g3270 247 CDD RING-H2_PA-TM-RING 177 220 - -
Amo13g3270 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 224 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3270 Amo-Chr13 104053057 104056444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3270 84 236 C3H Transcription Factor Family AT5G07040 40.385 2.59e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3270 - - gmx:100810240 290.041