Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3251 ATGGAAATGGAATTGGAAGCTGAAGCTGAAGCTGATTTTATGACGAATGACATGCTCACACTCCCACACGATCCCTTTGATCCCAACCACATCCATGATGATGATAATTTGGCTATTGAAGGCGAAAGATGTGGAATATGCATGGATATCGTCATTGATAGGGGAGTTCTCGATTGCTGTCAGCATTGGTTCTGTTTTGTATGCATTGATAACTGGGCTACAATCACTAATCTCTGCCCACTTTGCCAGAACGAGTTTCAGTTGATCACTTGTGTACCAGTTTATGATACCATTGGAGGCAATAAAGTTGAAGATGACTCATTCTTCAGAGATGACGAATGGTCCATTGAAGGGAAGAACAATACATTATCGTTTCCCTCCTACTACATTGATGAAAATGCAGTTACTTGTTTGGATGGTGATGGCTGCAAAGTTCGAAGTGGATTGGAAACTATTGAAGGAGATTCTGATCTTGATACATCAATTGCATGTGATTCATGTGATACATGGTATCATGCCTTCTGTGTGGGATTTGATACAGAAGGTACATCTGAAAGTACATGGTTATGTCCAAGATGCGTGGTCGGTGAAGTTTCTAAAGGAAGAGACACTGATTCAATGGAGAGCACGATGGTAGAATGTAACCCAGAGCATATTAACAATCAATGTCAGGCTGAGGATTCCTTTTCAAGAAAAGTTTGTGTGTCTGTTGCTGATGCGGGAGAGACAGCTGTTGTTGTTTCAATGGTTGATGGACATAAATGGGTTCCATCAGCAAGCGAGAAAGGCCTATTGCCTCTTGAACTTGGCAGGGATCAATTGACTGAATCATGTATATTAGATTCTGACACAACTAATCAGCAGAAAGCAATGGAGAAGAAGATTATGTCACCAATTGTGAAGGAACAAGAGCTGGAGTTGTGCTTATCACACAATGTATCTGGTAGCCTAAGTTCTAAATCCTTGGAGCATAATGATCCAAAGGAAAGTGCTCATGGAGCAAGGAGTGGACCAAGTAACCTTGATGAAACCAAGTTAGCTGATGAGTCCCATGTCAAAACTAGTCCTTCTAGAAATGAATCTGATATGGGTCTTCATCTTGGTTTATCAGTGGGCTCTTTCCTATCAGTTGATAATGTGGACAAGGATGGAATAAAAGATCACACAACTGGTGTCAAGCACCTGAGTCCAGATGAATGTTCTATGGAAGGAGATGTAATTGAAAACGATGTTAAGAAGGATAATACTAGTGTAACTGCTGGGAAGAGAAAGCATGTTGATCACAGCAATGATGAAGGTCATTTCAAAGTTGATGGGGATGTGAAGCCTGAACTTCCAATTGAAGTGTCTCGAAAGAAAATTAGAGCTGCTGGTGGTCAAATGACTAGTATTAATAACTCAGCTGATGCCCAGCTTTCAGACAATGGTCAAAAGAGCTCTGCTTTGAACCATTCTGCATCCAAGGAGGTTGTCAGACCAACTATAATGAATATAGTTAAAGGTACAAACCGTAGGCTTTCCAAGGGACCTACTGGCACTAATTCATCCGACAATGTGTCTAGAAAGGATGAAAATATGGCTGGATTGAGGGTAAAAAAGATCATGAAGAGAGTTGCTGATGATGGAGAATCATCCTTGATAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTTGAGGGAAATATTGATACAAAGCTTCTTGCAGCATTCAGGGTTGCTATAGCTGGACCCAAAACTGAACCTGTAAATAAGTTAACCCCTTCAGCTTTAAAGGCAAAGAAGTCGATGTTGCAGAAAGGAACGGTACGTGAGCATCTTACAAAGAAAATTTTTGGGACTTCAAATGGAAAAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGGTGCATGAGGGCTACAAGGCCTGAAAAAATTGAAACTTTAAAATCAGTTCTAGATCTACTAAGAAAAAATTCAGAGTCAACCCAGGGTCCTGAATGTCAGGCCAAGGATACTATTCTTTCCAGGTTGTATCTAGCAGATACATCTGTTTTCCCACGGAAAGATGATGTCAAGCCCCTCTCTGTACTTAAAACTGATGCTAGCTCAGAGCAGACTAAACAAAATAACCCGTCAGGAACAGATATAAAAAATCTTTCATGCAATGCCAGAGTTTGTTCATCTGAAACAAAAGTAGATAAGAAGATTATACATGGTTCAGCTAGTGATAATTCGGCTTCTCGTAAGACATCAGTTTCTTCTTCAGCTGGTGCCAAAGTTAATGCAAAAGAATTAGGACTTAAATCAGATTCTACGAAGAGTGATAAAAAGAAATGGGCCTTAGAGTTTCTTGCTAAGAAAACAGCTGCTGATAGCAAAAGGACGGCAAATGGAAGTCAAGAAGACAATACAATTTTTAAAGATAAATTTCCTTTGCTTGCCCAACTACCGGCTGATATGAGACCAGTACTGGGACCTTCTTGTCACAATAAAATTCCAATATCAGTGAGGCAGACACAGCTTTACCGCCTGACAGAGCGCTTGTTGAGGAACACAAATCTGCCAGTCATTCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAATCAATATTGAAAAGGAGGTTGCTGACAGATCGAGCAGCAAGCTTGTGTATTTGAACCTCTGCTCACAAGAGCTCCGACATCGTGCAAATAACACAAAATCCGATGTAGCTGAAGATACAAATCCCCCGGAGTCATCTGCCAAGCTTCCTGATCAATCAGAACATAATGCTGATGATTGTTCAACTGACCCTGCTGTTGAAGCCTTGAAAAATGCTGGTCTATTGTCTGATTCACCGCCTAGCAGTCCACATGATAACAGAGAAATAGGTAATGAAAATGATACTTCAGGGCCTGATAATATACTTGAATTGGATTCTCATCCTGAGCTGGACATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGACTACATTGGGGTTTCAAAGGTCTTGAACCCAAAACCAGAGGAAAGTGAGTCGAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAGTCAGATGCAGCTTTGGATGACTCAGACTGTAAAGGGTCCCTTAACAGTGAAGTACTACGGGATGCCTCCGGCTCAACAACCTCTCACATCGAAACAGTCCCTAGGGACTCAGCAACTGATGCAGAGATTGGCGGGCCTTCTGCTTCTGTTTCTTCTGAGTTATGTGAGAGTGCTGTCGAGCCAGCTGATTCCGAATTTGAAGAATTATATGGCCCTGACAAAGAACCACTCATAAAAAAATTTCCAGATGCCGAACCAAGAACAACATGTGGAGAGGGCAAGAAAGAAACACCAAGTGAGGCCACTGACAAATCTAATGTATCTGAAACTGGTAAAAATTCCCCAGGGAAAGAAGAGAAATCTGATGATATGAGTGCGAAGCAGTCTGAGTGTGACTCGATAAACCATGTAACAAAGAAGGTAGAAGCCTATATCAAGGAACATATGAGGCCACTGTGCAAGAGTGGTGTGATCACAGCAGAACAATACAGGTGGGCAGTTGCAAAAACAACAGAGAAGGTTATGAAGTATCATTGCAAAGCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAGCTTGCAGAGCAGTATGCCGAAGCAGCCCAACAGAACCGAAAAAATTGA 3729 0.4111 MEMELEAEAEADFMTNDMLTLPHDPFDPNHIHDDDNLAIEGERCGICMDIVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGGNKVEDDSFFRDDEWSIEGKNNTLSFPSYYIDENAVTCLDGDGCKVRSGLETIEGDSDLDTSIACDSCDTWYHAFCVGFDTEGTSESTWLCPRCVVGEVSKGRDTDSMESTMVECNPEHINNQCQAEDSFSRKVCVSVADAGETAVVVSMVDGHKWVPSASEKGLLPLELGRDQLTESCILDSDTTNQQKAMEKKIMSPIVKEQELELCLSHNVSGSLSSKSLEHNDPKESAHGARSGPSNLDETKLADESHVKTSPSRNESDMGLHLGLSVGSFLSVDNVDKDGIKDHTTGVKHLSPDECSMEGDVIENDVKKDNTSVTAGKRKHVDHSNDEGHFKVDGDVKPELPIEVSRKKIRAAGGQMTSINNSADAQLSDNGQKSSALNHSASKEVVRPTIMNIVKGTNRRLSKGPTGTNSSDNVSRKDENMAGLRVKKIMKRVADDGESSLIVQNLRKEIREAVRNKSSINFEGNIDTKLLAAFRVAIAGPKTEPVNKLTPSALKAKKSMLQKGTVREHLTKKIFGTSNGKRKRAWDRDCEIEFWKYRCMRATRPEKIETLKSVLDLLRKNSESTQGPECQAKDTILSRLYLADTSVFPRKDDVKPLSVLKTDASSEQTKQNNPSGTDIKNLSCNARVCSSETKVDKKIIHGSASDNSASRKTSVSSSAGAKVNAKELGLKSDSTKSDKKKWALEFLAKKTAADSKRTANGSQEDNTIFKDKFPLLAQLPADMRPVLGPSCHNKIPISVRQTQLYRLTERLLRNTNLPVIRRTADTELAVADAINIEKEVADRSSSKLVYLNLCSQELRHRANNTKSDVAEDTNPPESSAKLPDQSEHNADDCSTDPAVEALKNAGLLSDSPPSSPHDNREIGNENDTSGPDNILELDSHPELDIYGDFEYDLEDEDYIGVSKVLNPKPEESESKVKLVFSTMNLKSDAALDDSDCKGSLNSEVLRDASGSTTSHIETVPRDSATDAEIGGPSASVSSELCESAVEPADSEFEELYGPDKEPLIKKFPDAEPRTTCGEGKKETPSEATDKSNVSETGKNSPGKEEKSDDMSAKQSECDSINHVTKKVEAYIKEHMRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYAEAAQQNRKN* 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3251 1242 Coils Coil 548 568 - -
Amo13g3251 1242 SMART ring_2 44 82 IPR001841 -
Amo13g3251 1242 MobiDBLite consensus disorder prediction 1144 1164 - -
Amo13g3251 1242 MobiDBLite consensus disorder prediction 913 928 - -
Amo13g3251 1242 ProSiteProfiles Zinc finger PHD-type profile. 76 196 IPR019787 -
Amo13g3251 1242 SUPERFAMILY FYVE/PHD zinc finger 157 196 IPR011011 -
Amo13g3251 1242 MobiDBLite consensus disorder prediction 748 766 - -
Amo13g3251 1242 Pfam PHD-finger 157 194 IPR019787 -
Amo13g3251 1242 MobiDBLite consensus disorder prediction 458 483 - -
Amo13g3251 1242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 143 IPR013083 -
Amo13g3251 1242 ProSiteProfiles Zinc finger RING-type profile. 44 83 IPR001841 -
Amo13g3251 1242 MobiDBLite consensus disorder prediction 1052 1164 - -
Amo13g3251 1242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 199 IPR013083 -
Amo13g3251 1242 MobiDBLite consensus disorder prediction 417 439 - -
Amo13g3251 1242 MobiDBLite consensus disorder prediction 342 356 - -
Amo13g3251 1242 MobiDBLite consensus disorder prediction 459 483 - -
Amo13g3251 1242 Pfam Zinc finger, C3HC4 type (RING finger) 44 82 IPR018957 GO:0046872
Amo13g3251 1242 MobiDBLite consensus disorder prediction 909 983 - -
Amo13g3251 1242 PANTHER RING FINGER PROTEIN 41, 151 114 1239 - -
Amo13g3251 1242 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Amo13g3251 1242 MobiDBLite consensus disorder prediction 1098 1133 - -
Amo13g3251 1242 SUPERFAMILY RING/U-box 35 89 - -
Amo13g3251 1242 MobiDBLite consensus disorder prediction 747 769 - -
Amo13g3251 1242 PANTHER RING/U-BOX PROTEIN 114 1239 - -
Amo13g3251 1242 MobiDBLite consensus disorder prediction 316 364 - -
Amo13g3251 1242 SMART PHD_3 142 194 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3251 Amo-Chr13 102302099 102309677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3251 44 95 C3H Transcription Factor Family AT3G58030 37.037 8.39e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo13g3251 PHD 1.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3251 - - adu:107479708 2419.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3251 13 102302099 102309677 Amo13g3251 13 102302099 102309677 ECH
Amo13g3251 13 102302099 102309677 Amo03g1814 03 55239696 55241219 hybridization