Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3234 ATGGGTGTTTCACAAACAGAAATTCCAACGGCGTCTCCACATATGTATCCTCAGGAGCTTCAGTTAAAGCTGTACCAGGCCTTCATTTTCTCGATTCCAATACTGTTCTCCATAATTCTGGTTCTCCTATTCTACTTGTTCTACCTCAAGAGAAGGGCTTCCTCTCTCTCTTCTCCTCCCCTTCACTTACTTCCTACAATTCCCCATCCTCAAACTGCTCCCTACCCTTATCCTTCTTCGCCATACCGTTTAGATCTGACGCTGCAATTTCTGGACAAACTTCCAAGAATTTTATTTGATGAGGAACTGAGATCGAGGGACTCCGTATGCTGTGTATGTCTGGGAGAATTTGAGGTAAAAGAGGAGGTTCTACAGATTCCATATTGCAAGCATGTGTTTCACATAGAATGCATACACAACTGGCTTCGATCAAACTCCACATGCCCACTATGTAGATGCTCCATCATCCCCACCACCACCAAGTTCATTCTCAACAATCCTCCAGTCCTACCACCGCAGCACCAAGGTGGCTCGCCATCACACGTCATCGTATCTTTGCCTCCTCCTCAACCAGAACATGAACCCGCTGCTGCTTCCTCAATAAACACAACTTAA 615 0.4569 MGVSQTEIPTASPHMYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHLLPTIPHPQTAPYPYPSSPYRLDLTLQFLDKLPRILFDEELRSRDSVCCVCLGEFEVKEEVLQIPYCKHVFHIECIHNWLRSNSTCPLCRCSIIPTTTKFILNNPPVLPPQHQGGSPSHVIVSLPPPQPEHEPAAASSINTT* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3234 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 157 IPR013083 -
Amo13g3234 204 Pfam Ring finger domain 110 152 IPR001841 -
Amo13g3234 204 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Amo13g3234 204 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 10 163 - -
Amo13g3234 204 SUPERFAMILY RING/U-box 88 158 - -
Amo13g3234 204 SMART ring_2 110 151 IPR001841 -
Amo13g3234 204 MobiDBLite consensus disorder prediction 167 204 - -
Amo13g3234 204 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 10 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3234 Amo-Chr13 100950860 100953231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3234 10 157 C3H Transcription Factor Family AT4G10150 39.610 6.32e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3234 K19039 - gmx:100806499 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3234 13 100950860 100953231 Amo13g3234 13 100950860 100953231 ECH
Amo13g3234 13 100950860 100953231 Amo03g1908 03 63040337 63042536 hybridization