Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3196 ATGTCAAGGTCGTTGTTAGCAGAGAAGATCGGAGCAGCAGGGCGGGTGGTGGCAGTGGCGATTGAGAACAACAAAACAAGCCAGGATGCAGCAAAATGGACAGTTGATAATCTTCTTCCAAAAGACCAAGTTCTCGTACTTATCCATGTTAGACAACAAGCATCTTCCATTCGCTCACCATGTAATAATAATATATATGCTATCGTGTGTCTGCGTTATTACGGAAACCTTTTACCCGTTAATGGCGACGATGATCTGGGAAGAGCATACAGGCAACAAATGGAGAATGAAACCAAAGAGCTTTTCGGCTCATTTCGTGTCTTCTGCAATAGAAAAAATATCCAATGCAAAGAAATCTTGCTGGAAGACACGGATATACCTAAGGCGATAATAAATAGCATTACATCCTATTCCATTGAACTTTTAGTACTTGGATCATCAAAGAGCAGCTTTCTCAAAAAAATCAGGGGTGCGGAGGTTCCAAACCAAGTATCGAAAGGGGCACCACCATTCTGCACTGTGTACGTTATTAACAAAGGAAAAATCTCAACTGTGAGATATGCAACTGCTCAATTAACTGTTAGACCCCGTAACAGCATATTGCCGCTGCACTCTACTCAGTCTCCGTCTCCGTCTGAGTCTTACTCTGAGTCTCAGTTCTTCAGTACTGAAAGATTCGATTCGCGGCTGACACGCAACCACCCTCCACGACCACTGGAGAAACCTGGATACCATGGAAGGCAGTCCTTGGAGGACTTCTCAAGCCCAATCAACAAACTTGGTAGACCAGAGGCCAAACCATATGAACCGTCGATGACTCAATGCGATATCTCATTCGTGAATGGAAAGCCAGGGGTTGATAAGTTGTTCTCTTCATTGTATGACGAAAGTGTGGACGATGGAGCTCCCCCTCGTCTTTCTTTGGGATCTGACTTCGGAGCTAACCTTCTCGACTGCGCTTTCACTTCACAAGAGACAGCTAATTTTAGCGACGGATACTCTTTTAATTCACAGGACAGTGGAGCATCATCAAGCCTAGCTATTTTGGATGAAGTGGAAACTGAAATGAGAAGACTTAAGCTAGAACTTGAGCAGTCAATGGATGTGTATAGCACAGCATGCAAGGAGGCTTTGATAGCAAAGCAAAAGGCATTGGAGCTTCGTAATTTGAAAATGCGAGAATGGAAGAAGTTTCATGGGGAGCAAACTGCTGAAAAAGCAGAGTTGGAATTAGCTACTAAGGAGAAAGAAAAGTGTAGAGCAGCCTCGAATGCAGCGGAAGTATCTAGAAAAATAGCAGAGTTGGAAGCTAAGAAAAAAATGAATTGTGGGATGAGAATGAGAGCAGAAGCGGAGCTAAAGCAGTCGGGAGAGGGTTTGTTATACGGGGGTTCTGCGAGGTATAGAAGATACACGGTTGAGGAAATTGAAGCAGCGACAAAAGGCTTCTCCAACGCTCTCAAGGTGGGTGAAGGAGGTTATGGGCCAGTGTATAAGTGTGAACTAGATCACACACTAGTTGCAATCAAAGTACTTAAGACAAATGCATCTCAAGGATGGTCACAGTTTCACCAAGAGATTGAGGTGCTAAGCTGCATAAGGCATCCACACATGGTTCTCCTGCTGGGAGCGTGTCCGGAGATTGGATGCCTAGTGTACGAGTACATGGCTAATGGAAGCTTAGACGATTGCCTCTTCCACAGAGGCAATGCACCAGTCCTCCCATGGCAGTTAAGATTCCGAATTGCTGCAGAGATTGCAACTGCCCTTCTTTTCCTCCACCAGACAAAGCCGGAGCCACTGGTGCACCGTGACTTGAAACCTGGAAACATTTTGCTTGATCGCAACCTGGTGAGCAAGATTGGTGACGTCGGGTTAGCGAGGCTTGTCCCTCCTTCGGTTTCAGACGTTGTCACACAATATAGACTCACATCAACTGCAGGAACTTTCTGCTACATTGATCCTGAGTACCAGCAAACAGGGATGCTTGGAGTCAAGTCTGATATTTACTCACTGGGAGTCATGCTTCTTCAGATCATAACTGCAAGGTCACCAATGGGTTTGACTCATCAGGTTGCGAAAGCCATTCAGAGAGGCACTTTTGCTGAAATGCTTGACCCTGCTGTTGAGGACTGGCCAATTCAACATGCCTTGCATTTTGCAAAGATTGGCCTCAGATGTGCAGAGATGAAAAGAAAAGATAGACCTGATCTTGCAAAAGTTGTATTGCCTGAGTTAAACAAGCTCAGACAGTTTGCTGAAGAAAACACGCCTATGATGATGTTTGGTGTTGGCGCAGGATTCGCTTCTCGCTCTACAACAACTTCCTTATTTCAAGACACCAGTGAAACTCAATCGTTCTCTGAAATCTCTGAAAGTAGCCTCTCAAGCACGCCCTCAATCGAGAAAATTGAAAGTTCCGGGCTTGAGGCGGAAGTTACACTTGGCATGCGCTTTTAA 2460 0.4516 MSRSLLAEKIGAAGRVVAVAIENNKTSQDAAKWTVDNLLPKDQVLVLIHVRQQASSIRSPCNNNIYAIVCLRYYGNLLPVNGDDDLGRAYRQQMENETKELFGSFRVFCNRKNIQCKEILLEDTDIPKAIINSITSYSIELLVLGSSKSSFLKKIRGAEVPNQVSKGAPPFCTVYVINKGKISTVRYATAQLTVRPRNSILPLHSTQSPSPSESYSESQFFSTERFDSRLTRNHPPRPLEKPGYHGRQSLEDFSSPINKLGRPEAKPYEPSMTQCDISFVNGKPGVDKLFSSLYDESVDDGAPPRLSLGSDFGANLLDCAFTSQETANFSDGYSFNSQDSGASSSLAILDEVETEMRRLKLELEQSMDVYSTACKEALIAKQKALELRNLKMREWKKFHGEQTAEKAELELATKEKEKCRAASNAAEVSRKIAELEAKKKMNCGMRMRAEAELKQSGEGLLYGGSARYRRYTVEEIEAATKGFSNALKVGEGGYGPVYKCELDHTLVAIKVLKTNASQGWSQFHQEIEVLSCIRHPHMVLLLGACPEIGCLVYEYMANGSLDDCLFHRGNAPVLPWQLRFRIAAEIATALLFLHQTKPEPLVHRDLKPGNILLDRNLVSKIGDVGLARLVPPSVSDVVTQYRLTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGVMLLQIITARSPMGLTHQVAKAIQRGTFAEMLDPAVEDWPIQHALHFAKIGLRCAEMKRKDRPDLAKVVLPELNKLRQFAEENTPMMMFGVGAGFASRSTTTSLFQDTSETQSFSEISESSLSSTPSIEKIESSGLEAEVTLGMRF* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3196 819 PANTHER OS02G0152300 PROTEIN 6 801 - -
Amo13g3196 819 Coils Coil 349 369 - -
Amo13g3196 819 MobiDBLite consensus disorder prediction 227 247 - -
Amo13g3196 819 Pfam Protein kinase domain 487 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3196 819 Gene3D Transferase(Phosphotransferase) domain 1 556 761 - -
Amo13g3196 819 SUPERFAMILY Protein kinase-like (PK-like) 465 742 IPR011009 -
Amo13g3196 819 Gene3D Phosphorylase Kinase; domain 1 461 555 - -
Amo13g3196 819 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 6 801 - -
Amo13g3196 819 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 178 - -
Amo13g3196 819 MobiDBLite consensus disorder prediction 780 802 - -
Amo13g3196 819 CDD STK_N 16 180 - -
Amo13g3196 819 Gene3D HUPs 15 177 IPR014729 -
Amo13g3196 819 SMART serkin_6 483 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3196 819 ProSiteProfiles Protein kinase domain profile. 483 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3196 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672|GO:0006468
Amo13g3196 819 MobiDBLite consensus disorder prediction 226 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3196 Amo-Chr13 96650988 96654335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3196 17 764 Receptor kinase-like Gene Family AT5G35380 51.126 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Amo13g3196 Pkinase 2.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3196 - - adu:107479882 1512.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3196 13 96650988 96654335 Amo13g3196 13 96650988 96654335 ECH
Amo13g3196 13 96650988 96654335 Amo03g1829 03 57094451 57101912 hybridization