Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3149 ATGGTGAGTGGGAAAGTGGTAGTTGTTGCAGTTAAAGCTTCAAGAGAAATTTCAAGAACTGCTTTGGTTTGGGCATTGACTCATGTTGTTCAACCAGGGGATTCCATTAAGCTGTTAGTTGTCATTCCTTTTCTCTCCTCAGGCAAGAGGAATTGGGGATTCTCAAGATTTACCAGTGATTGTACCACTAGTAACTGGAGATCCCACTTAGGAAGCGCTTCAGATCAGAAAGAAATTATTACAAGTTCCTGTTCCCAATTGGTGCTTCAACTACATGAGTTATATGATCCAGACAAGATAAAGATCAGCGTCAAGATTCTTTCGAGTTCTTTATGTGGAGCAGTTGCCATTGAAGCCAAGAGAGTCCACTCAAGCTGGGTTATATTGGACAAAAAATTGAAACAAGAAAAGAAGTGCTGCATGGAGCAGCTGCATTGCAATATTGTAAGTATGAAGCGATCAAGGGCAAAGATTCTGCGCTTGAATTTGAACAGTTCACCGAAGATGGAACTTAATGATGGGGGGTGTTCATTGTCATTGGAGCTGAGTGCATATGCAAAACAAAATCCAGACACAATTAGAGGTCCTGCTGTTACTCCAGCTAGTAGTCCTGAGCAAGGATCGCCGCTATTGACTGCAACTGATATTGGTACCTCATCACTATCGAGCTCAGATCCTAGCACTTCACCATTTTTCCAGAGTGATATTTATGAAAGGCGAAGGCACGAGGGACTGAAAAATCTGGAGTATATTGAATCTGACTCGGAGAGTGAAAAGCTAAGTTTATCTTCAAAAAGTTCATATATTCAGCCCTGGATTGCCAATGTGATTTGTCTTGATGGTGAGGACAGTATGCAAAGGTTGGGCGATCAAGACCCTGTCTTAGGAGTGCTTAATTGTAAGATTGATGTCAACCTAAGCAAAAGTGTTAGAGATGCAATTTCACTTGCAAGAAATGCACCTCCTGGTCCTCCTCCATTGTGCTCTATTTGTCAGCACAAGGCACCTGCATTTGGAAACCCTCCAAGGTGGTTTACATTTGCCGAATTGCAACTCGCCACGGGTGGTTTTTCACAAGCAAATTTCTTGGCACAAGGTGGTTTTGGTTCTGTACACCGCGGCGTGCTACCGGATGGGCAAGTCATTGCTGTGAAGCAGTATAAATTAGCCAGTACACAAGGTGATAAAGAATTTTGCTCAGAAGTTGAAGTCTTAAGCTGCGCACAACATCGGAATGTTGTGACGCTAATTGGGTTTTGTGTGGAGGATGGTAGAAGATTACTAGTTTATGAATACATATGCAATGGCTCTTTGGATTCTCATCTTTATGGACGAAAACAGAAAGTACTAGAATGGTCTGCTCGGCAAAAAATCGCAGTGGGAGCTGCTCGCGGCTTAAGGTACCTACATGAAGAATGCAGAGTGGGATGTATTGTGCACCGTGATATGCGACCTAACAATATCCTCCTTACTCATGATTTTGAAGCACAGGTGGGAGATTTTGGACTTGCTAGGTGGCAACCTGATGGAGATTTGGGTGTGGAAACCAGGGTCATAGGAACATTTGGGTATTTGGCGCCAGAATATGCTCAAAGTGGGCAAATAACAGAGAAAGCTGATGTGTATTCGTTTGGAATAGTGCTATTGGAGCTTGTAACAGGAAGGAAAGCCATTGATATAAACCGCCCCAAAGGCCAGCAATGCCTCAGTGAATGGGCACGGCCATTGCTTGAACTTAAACATGAAGAAGCAGAAGCGAGAGAAGAGCTAGTTGATCCTATAATATGGAAAGGGAAAGGGTATATTGCTAAAGAGGTTAATCGAATGTTGCAATGTTGCTCCTTGTGCATCCGAAGAGACCCTCATTCAAGGCCCAGAATGTCTCAGGTGCTAAGGATGCTGGAAGAATGA 1911 0.4333 MVSGKVVVVAVKASREISRTALVWALTHVVQPGDSIKLLVVIPFLSSGKRNWGFSRFTSDCTTSNWRSHLGSASDQKEIITSSCSQLVLQLHELYDPDKIKISVKILSSSLCGAVAIEAKRVHSSWVILDKKLKQEKKCCMEQLHCNIVSMKRSRAKILRLNLNSSPKMELNDGGCSLSLELSAYAKQNPDTIRGPAVTPASSPEQGSPLLTATDIGTSSLSSSDPSTSPFFQSDIYERRRHEGLKNLEYIESDSESEKLSLSSKSSYIQPWIANVICLDGEDSMQRLGDQDPVLGVLNCKIDVNLSKSVRDAISLARNAPPGPPPLCSICQHKAPAFGNPPRWFTFAELQLATGGFSQANFLAQGGFGSVHRGVLPDGQVIAVKQYKLASTQGDKEFCSEVEVLSCAQHRNVVTLIGFCVEDGRRLLVYEYICNGSLDSHLYGRKQKVLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEAQVGDFGLARWQPDGDLGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAIDINRPKGQQCLSEWARPLLELKHEEAEAREELVDPIIWKGKGYIAKEVNRMLQCCSLCIRRDPHSRPRMSQVLRMLEE* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3149 636 PANTHER OS01G0253100 PROTEIN 6 284 IPR045271 GO:0004714|GO:0006468
Amo13g3149 636 PANTHER OS01G0253100 PROTEIN 290 635 IPR045271 GO:0004714|GO:0006468
Amo13g3149 636 SUPERFAMILY Protein kinase-like (PK-like) 338 634 IPR011009 -
Amo13g3149 636 Pfam Protein kinase domain 361 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3149 636 CDD STKc_IRAK 363 636 - -
Amo13g3149 636 Gene3D Transferase(Phosphotransferase) domain 1 433 636 - -
Amo13g3149 636 MobiDBLite consensus disorder prediction 191 229 - -
Amo13g3149 636 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 6 284 - -
Amo13g3149 636 ProSitePatterns Tyrosine protein kinases specific active-site signature. 478 490 IPR008266 GO:0004672|GO:0006468
Amo13g3149 636 ProSiteProfiles Protein kinase domain profile. 357 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3149 636 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 290 635 - -
Amo13g3149 636 MobiDBLite consensus disorder prediction 195 229 - -
Amo13g3149 636 Gene3D Phosphorylase Kinase; domain 1 329 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3149 Amo-Chr13 93351448 93354404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3149 319 630 Trihelix Transcription Factor Family AT1G68690 50.321 6.31e-101 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Amo13g3149 Pkinase 6.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3149 - - aprc:113855006 1007.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3149 13 93351448 93354404 Amo13g3149 13 93351448 93354404 ECH