Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3148 ATGATTTATATGATCCAGACAAGAAAATTGAAACAAGAAAAGAAGTGCTGCATGGAGCAGCTGCATTGCAATATTGTAAGTATGAAGCGATCAAGGGCAAAGATTCTGCGCTTGAATTTGAACAGTTCACCGAAGATGGAACTTAATGATGGGGGGTGTTCATTGTCATTGGAGCTGAGTGCATATGCAAAACAAAATCCAGACACAATTAGAGGTCCTGCTGTTACTCCAGCTAGTAGTCCTGAGCAAGGATCGCCGCTATTGACTGCAACTGATATTGGTACCTCATCACTATCGAGCTCAGATCCTAGCACTTCACCATTTTTCCAGAGTGATATTTATGAAAGGCGAAGGCACGAGGGACTGAAAAATCTGGAGTATATTGAATCTGACTCGGAGAGTGAAAAGCTAAGTTTATCTTCAAAAAGTTCATATATTCAGCCCTGGATTGCCAATGTGATTTGTGTTGATGGTGAGGACAGTATGCAAAGGTTCGGCGATCAAGACCCTGTCTTAGGAGTGCTTAATTGTAAGATTGATGTCAACCTAAGCAAAAGTGTTAGAGATGCAATTTCGCTTGCGAGAAATGCACCTCCTGGTCCTCCTCCATTGTGCTCTATTTGTCAGCACAAGGCACCTGCATTTGGAAACCCTCCAAGGTGGTTTACCTTTTCCGAATTGCAACTCGCCACGGGTGGTTTTTCACAAGAAAATTTCTTGGCACAAGGTGGTTTTGGTTCTGTACACCGCGGCGTGCTACCGGATGGGCAAGTCATTGCTGTGAAGCAGTATAAATTAGCCAGCACACAAGGTGATAAAGAATTTTGCTCAGAAGTTGAAGTCTTAAGCTGCGCACAACATCGGAATGTTGTGACGCTAATTGGGTTTTGTGTGGAGGATGGTAGAAGATTACTAGTTTATGAATACATATGCAATGGCTCTTTGGATTCTCATCTTTATGGACGAAAACAGAAAGTACTAGAATGGTCTGCTCGGCAAAAAATCGCAGTGGGAGCTGCTCGCGGCTTAAGGTACCTACATGAAGAATGCAGAGTGGGATGTATTGTGCACCGTGATATGCGACCTAACAATATCCTCGTTACTCATGATTTTGAAGCACAGGTGGGAGATTTTGGACTTGCTAGGTGGCAACCTGATGGAGATTTGGGTGTGGAAACCAGGGTCATAGGAACATTTGGGTATTTGGCGCCAGAATATGCTCAAAGTGGGCAAATAACAGAGAAAGCTGATGTGTATTCATTTGGAATAGTGCTATTGGAGCTTGTAACAGGAAGGAAAGCCATTGATATAAACCGCCCCAAAGGCCAGCAATGCCTCAGTGAATGGGCACGGCCATTGCTTGAACTTAAACATGAAGAAGCAGAAGCGAGAGAAGAGCTAGTTGATCCTATAATATGGAAAGGGAAAGGGTATATTGCTAAAGAGGTTAATCGAATGTTGCAATGTTGCTCCTTGTGCATCCGAAGAGACCCTCATTCAAGGCCCAGAATGTCTCAGGTGCTAAGGATGCTGGAAGAATGA 1542 0.4371 MIYMIQTRKLKQEKKCCMEQLHCNIVSMKRSRAKILRLNLNSSPKMELNDGGCSLSLELSAYAKQNPDTIRGPAVTPASSPEQGSPLLTATDIGTSSLSSSDPSTSPFFQSDIYERRRHEGLKNLEYIESDSESEKLSLSSKSSYIQPWIANVICVDGEDSMQRFGDQDPVLGVLNCKIDVNLSKSVRDAISLARNAPPGPPPLCSICQHKAPAFGNPPRWFTFSELQLATGGFSQENFLAQGGFGSVHRGVLPDGQVIAVKQYKLASTQGDKEFCSEVEVLSCAQHRNVVTLIGFCVEDGRRLLVYEYICNGSLDSHLYGRKQKVLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEAQVGDFGLARWQPDGDLGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAIDINRPKGQQCLSEWARPLLELKHEEAEAREELVDPIIWKGKGYIAKEVNRMLQCCSLCIRRDPHSRPRMSQVLRMLEE* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3148 513 PANTHER OS01G0253100 PROTEIN 166 512 IPR045271 GO:0004714|GO:0006468
Amo13g3148 513 PANTHER OS01G0253100 PROTEIN 3 162 IPR045271 GO:0004714|GO:0006468
Amo13g3148 513 Pfam Protein kinase domain 236 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3148 513 ProSiteProfiles Protein kinase domain profile. 234 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g3148 513 ProSitePatterns Tyrosine protein kinases specific active-site signature. 355 367 IPR008266 GO:0004672|GO:0006468
Amo13g3148 513 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 166 512 - -
Amo13g3148 513 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 3 162 - -
Amo13g3148 513 MobiDBLite consensus disorder prediction 72 106 - -
Amo13g3148 513 Gene3D Phosphorylase Kinase; domain 1 206 309 - -
Amo13g3148 513 SUPERFAMILY Protein kinase-like (PK-like) 215 511 IPR011009 -
Amo13g3148 513 Gene3D Transferase(Phosphotransferase) domain 1 310 513 - -
Amo13g3148 513 CDD STKc_IRAK 240 513 - -
Amo13g3148 513 MobiDBLite consensus disorder prediction 68 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3148 Amo-Chr13 93293068 93296033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3148 196 507 Trihelix Transcription Factor Family AT1G68690 50.321 8.43e-103 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Amo13g3148 Pkinase 3.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3148 - - aprc:113855006 813.527