Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3130 ATGGGAAGAAGTCCATGCTGTGACAAAGCTAACGTGAAAAGAGGGCCATGGTCTCATGAAGAAGATGAAATACTCAAAAGCTACCTCAACAAACATGGCTCTGCTGGTAACTGGATAGCTCTTCCTCTCAAAGCAGGCCTTAAACGCTGCGGGAAAAGCTGTCGTCTGAGATGGCTCAACTATCTCAGGCCTCACATCAAGCATGGAGCTTTCACTGACGATGAAGACAAACTTATCTCCACCCTTTATGCTACCATTGGAAGCAGGTGGTCCCTTATAGCAGCTCAACTACCTGGAAGAACTGATAATGATGTCAAAAATCACTGGAACACTAAGCTTAGGAAGAAGTTCTTCGCAGGAGGAATAAACACTGCCAATGCCACTACTTCTGCTGTTTTGGGTTTGTACCAAACACCATTCCCAGTTCCATCAAAAATGCTGCCTTTGGAATCAGACATTTCAGCTGCTAATCCCTTGGTAATAAAAGAGAAAGATCATGTTGGTCATCAGTGGCTTGGTTATTATGCTGAAGAAGATGATGCATTCTTGCTTGATTTTGTGCAAAATGGATTTGCTTATTCTCAATATAAAAACACCCAACTAGACCCATCATCATCGTCGTCGTCATATATCTAA 636 0.4261 MGRSPCCDKANVKRGPWSHEEDEILKSYLNKHGSAGNWIALPLKAGLKRCGKSCRLRWLNYLRPHIKHGAFTDDEDKLISTLYATIGSRWSLIAAQLPGRTDNDVKNHWNTKLRKKFFAGGINTANATTSAVLGLYQTPFPVPSKMLPLESDISAANPLVIKEKDHVGHQWLGYYAEEDDAFLLDFVQNGFAYSQYKNTQLDPSSSSSSYI* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3130 211 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Amo13g3130 211 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Amo13g3130 211 SMART sant 13 64 IPR001005 -
Amo13g3130 211 SMART sant 67 115 IPR001005 -
Amo13g3130 211 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Amo13g3130 211 CDD SANT 16 62 IPR001005 -
Amo13g3130 211 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Amo13g3130 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Amo13g3130 211 Gene3D - 69 131 - -
Amo13g3130 211 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Amo13g3130 211 PANTHER OS09G0431300 PROTEIN 1 123 - -
Amo13g3130 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Amo13g3130 211 CDD SANT 70 113 IPR001005 -
Amo13g3130 211 Gene3D - 7 68 - -
Amo13g3130 211 PANTHER OS09G0431300 PROTEIN 1 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3130 Amo-Chr13 91713835 91714733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3130 1 119 MYB Transcription Factor Family AT5G57620 73.950 1.87e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g3130 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3130 K09422 - gmx:778160 239.58