Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3120 ATGGAAGCTAGTACCGGGCTTTTTGCTGCGACCCATGACAACAATGATCTTGTGGTCATTCAAGGACACAACGAGCCAAGGCCTGTGAAGAACTTAGATGGCCAACTATGTGAAATATGCGGTGACTTAGTGGGACTAACTGTGGACGGAGACTTGTTTGTAGCTTGCGAGGAATGTGGGTTTCCCGTGTGTAGGCCTTGTTACGAGTACGAAAGAAGGGAAGGGACTCAAGTTTGCCCCCAGTGCCATACAAGATACAAGCGTATCAAAGGTAATTTGGAACGGAAACAATACAAAAAGGCAACTACCTACTCCAAAAGTTTGTTTTCTTTCTCCTATTTTCTGCATGTATTTGGATTAGCACGGTGGAGTTATGGAACGCTGGTGCGCCGTAGGTTCTCCTTCAATTGCGACCGAGTGGTTCGGTCAGACCGAGGCTCACCGGATTTGACCGATTTTTGCCAGTTCACTACGGGTTTGACTGGTTCATTCCGATTTTCTACCTTAAGCGAACATGAATTCAAAATGTTGGAAGAAAAGGAAGAGTTGCGGCAAAGGAAGAAGAGTAGCGGATATGATAATGAGAATGCTAAATCAGCATCCTTGGCCAAGCCTAAATCTGAAAATTTTGAACGTCTTCGTGATGTAGGCTATGAAAAATTTGCTGACAAAGAGAGAGCAGATGACTGGATGTTAAACCAAGGAAATCTATGGCCTGAAACTGAGGCTACAGTTGATCCCGAAAAGGCTATTAAAGATGAAAGTAGACAGCCACTCTCAAGGAAGGTGGCAATACCATCCGGAAGACTCAGCCCTTACAGGATGATGGTTGCAGCGAGGCTCGTGATTCTCTTGCTATTCTTTCAATACAGAATCTTCCACCCAGTACCTGAAGCAATTGGACTCTGGTTCACATCTGTGGTGTGTGAAATTTGGCTAGCATTGTCATGGCTGGTTGATCAACTTCCTAAATGGTTTCCCATTGATCGCCAGACGTATATTGATCGTCTTTCAATCAGATTTGAACCGGCGGACAAGCCGAATATGCTTTCTCCAATAGATATATTTGTCACTACAGTGGATCCGACGAAGGAACCTCCTCTAGTTACAGCCAATACTGTTCTTTCAATCTTGGCTCTGGATTACCCAGCTGACAAAATCTCATGTTACAGAGAATATGAAGAATTTAAGGTGAGGATTAATGCACTTGTGGCGAAGTCCATGAGAGTTCCAGCAGAAGGGTGGACAATGAAAGATGAGACACCGTGGCCGGGAAACAACACCAACGATCATCCAAGTATGATACAAGTCCTTCTTGCTCGAGGTGGAGGCCACCACCCCGACCAACTTCCCTGTCTTGTATACATATCTCGTGAGAAAAGGCCGGCATTCCAACACCACAACAAAGCTGGTGCAATAAATGCCTTGCTTCGAGTATCAACAGTGCTAAGCAATGCTCCCTTCGTGCTGAACTTGGATTGCAATCATTATGTTAATAACAGCAAAGTCGTGCGTGAGGCCATGTGTTTCTTTATGGACATCCAACTTGGGAATGGCATTGGCTTTGTTCAGTTTCCTTTAAGATTTGACAGCCTTGACAGGAACGATCGTTATGCCAACAAGAACACTGTTTTGTTTGATCTACTGAAATCAGAGATGAATTTTGAGAACAGATTTCAAAAATCACATTTTGCTAATTCTTCATCAACAGAAGAAGGTGGCGTCGATGCTTCTTCCGGTCAGGAGGCCCTGCTCAAAGAAGCCATTCATGTCATGAGCTGCAAATACGAAGACAGAACTCTATGGGGATATGAGGTTGGCATGAGCTATGGATCTATAGCTGCAGATACTCTTACGAGTTTCAAGTTGCATAGTCGAGGCTGGGAATCGGTATATTGCATGCCGAAGAGAGCTGCATTCAGGGGGACAGCTCCTATCAACCTTACAGATAGACTTAACCAAGTGCTTAGATGGGCGGTGGGATCACTTGAGATCCTCTTCAGCCGCCATTGCCCGCTGTGGTACGGCTTCAACGAAGGAAAAATGAAGACGCTTCAAAGGGTTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCCATACCTCTTTTGATATATTGTCTCATTCCTGCTATCTGCTTGCTCACTGATAAATTCATCACACCTTCGGTAATAAATTTTCTTTTTATTGATTCTTGTTCTTTCTTGTTGTGTAGTTTTGGAAGCCTTTTATCAGCTTACAAAGTTCCTGTTATATCATTCCAGGTAGGGACATTCGCAAGTCTAGTCTTTATTAGTCTATTCATCACCATCTTTGCATCGGCCATCCTCGAATTGAGATGGAGTGGTGTTAGCCTTGAGGAATGGTGGAGGAATCAGCAATTCTGGGTCATCGGAAGTGTGTCTGCACACATGTTCGCCGTTGTACATAGCCTCATGAAAGCCCTGCCCCTGGTAAGAAGCAATATCAACTTCATCACCGTATCGAAGGCGCCGGACGAAGGGCAGTTCCACCAGCTGTACACCATCAAATGGACTGCTCTCCTTATACCTCCAACTACAATCATAATAATCAACCTCATTGGCATTGTAGCTGGTTTCACAGATGCCATAAACAGTGGTGGACATTCTTGGGGAGCACTTCTTGGGAAGCTCTTCTTCTCTTTGTGGGTTATTGTCCATTTGTACCCATTCCTTAAAGGCCTCATGGGTAGGCAGAACCGAACACCAACGCTTATAGTCATATGGTCGGTGCTTTTGGCTTCTATCTTCTCCTTGGTTTGGGTAAGGATTGACCCTTTTGTGTTGAAAACAAAAGGACCAGACGCTAAGCAATGTGGAATCAGTTGTTGA 2853 0.4458 MEASTGLFAATHDNNDLVVIQGHNEPRPVKNLDGQLCEICGDLVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGNLERKQYKKATTYSKSLFSFSYFLHVFGLARWSYGTLVRRRFSFNCDRVVRSDRGSPDLTDFCQFTTGLTGSFRFSTLSEHEFKMLEEKEELRQRKKSSGYDNENAKSASLAKPKSENFERLRDVGYEKFADKERADDWMLNQGNLWPETEATVDPEKAIKDESRQPLSRKVAIPSGRLSPYRMMVAARLVILLLFFQYRIFHPVPEAIGLWFTSVVCEIWLALSWLVDQLPKWFPIDRQTYIDRLSIRFEPADKPNMLSPIDIFVTTVDPTKEPPLVTANTVLSILALDYPADKISCYREYEEFKVRINALVAKSMRVPAEGWTMKDETPWPGNNTNDHPSMIQVLLARGGGHHPDQLPCLVYISREKRPAFQHHNKAGAINALLRVSTVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRNDRYANKNTVLFDLLKSEMNFENRFQKSHFANSSSTEEGGVDASSGQEALLKEAIHVMSCKYEDRTLWGYEVGMSYGSIAADTLTSFKLHSRGWESVYCMPKRAAFRGTAPINLTDRLNQVLRWAVGSLEILFSRHCPLWYGFNEGKMKTLQRVAYINSTVYPFSSIPLLIYCLIPAICLLTDKFITPSVINFLFIDSCSFLLCSFGSLLSAYKVPVISFQVGTFASLVFISLFITIFASAILELRWSGVSLEEWWRNQQFWVIGSVSAHMFAVVHSLMKALPLVRSNINFITVSKAPDEGQFHQLYTIKWTALLIPPTTIIIINLIGIVAGFTDAINSGGHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRIDPFVLKTKGPDAKQCGISC* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3120 950 PANTHER CELLULOSE SYNTHASE 171 390 - -
Amo13g3120 950 PANTHER CELLULOSE SYNTHASE 752 950 - -
Amo13g3120 950 PANTHER CELLULOSE SYNTHASE 391 548 - -
Amo13g3120 950 Pfam Cellulose synthase 551 730 IPR005150 GO:0016020|GO:0016760|GO:0030244
Amo13g3120 950 Pfam Cellulose synthase 752 944 IPR005150 GO:0016020|GO:0016760|GO:0030244
Amo13g3120 950 Pfam Cellulose synthase 353 390 IPR005150 GO:0016020|GO:0016760|GO:0030244
Amo13g3120 950 Pfam Cellulose synthase 391 548 IPR005150 GO:0016020|GO:0016760|GO:0030244
Amo13g3120 950 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 92 - -
Amo13g3120 950 SUPERFAMILY RING/U-box 22 97 - -
Amo13g3120 950 PANTHER CELLULOSE SYNTHASE 1 92 - -
Amo13g3120 950 PANTHER CELLULOSE SYNTHASE 548 738 - -
Amo13g3120 950 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 426 567 IPR029044 -
Amo13g3120 950 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 103 IPR013083 -
Amo13g3120 950 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 548 738 - -
Amo13g3120 950 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Amo13g3120 950 Pfam Zinc-binding RING-finger 27 92 IPR027934 -
Amo13g3120 950 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 752 950 - -
Amo13g3120 950 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 171 390 - -
Amo13g3120 950 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 391 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3120 Amo-Chr13 91270591 91278636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3120 549 950 Cell Wall Biosynthesis AT5G17420 63.772 8.59e-174 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3120 K10999 - gmx:100807219 659.833