Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3114 ATGGATATGTACATTCGTGTTAAACGTAGTAAGACAACATACTTCATCAGGTGCAAGCCAACTGATAAAATTCTGGACATAAAGCTTAAGTTGCAAGAACTTGTTGATCAGCCTACTAATAACCAAAGGTTAATTATACCTGCTACAGGGGAAGTATTAGAGGACTCAAGGACTCTGGCGGATCAAAAGGTTGAAAATGATGCAGTTGTTGCACTGACCTTGAGAAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTTCGGCCAAATGATTTCTACCAAGCGCGTGATGCAGATGGTGCTAATTGGTAA 312 0.3974 MDMYIRVKRSKTTYFIRCKPTDKILDIKLKLQELVDQPTNNQRLIIPATGEVLEDSRTLADQKVENDAVVALTLRKDDNEFEEVNIVRPNDFYQARDADGANW* 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3114 103 SMART ubq_7 3 75 IPR000626 GO:0005515
Amo13g3114 103 Pfam Ubiquitin family 5 76 IPR000626 GO:0005515
Amo13g3114 103 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Amo13g3114 103 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Amo13g3114 103 Gene3D - 1 92 - -
Amo13g3114 103 PANTHER OS03G0364000 PROTEIN 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3114 Amo-Chr13 91049401 91058780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3114 1 75 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 33.333 2.12e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3114 K03873 - gmx:100499885 199.519