Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3048 ATGTTGACGCTGAAGGGAGGAACAAGGCCGCCATGGGTGAGCCTAGGAGCCTCTGTGTGGGTCCAAATAGCCTCCGGGAACACGTTCACGTTCCCTCTCTACTCCCACTCGCTGAAATCGGTTCTTGGATTCAACCAGCGTCAGCTCACATTGCTCGGTGTGGCCAACGACATCGGCGAGAATGTCGGCTTGCTCCCTGGCCTCGCCTGCAACAAGTTCCCGCCTTGGGCCATCCTCCTCGTTGGTTCTCTCGCCTCCTTCCTCGGTTACGGACTGATCTGGCTCGCCCTTAGTCAAACCCTTAAATCCCTCCCTTACTTGCTGCTATGGTCTGCCCTCGTTATTGCTGCCAACAGCAGTGCATGGTTAACCACATCCGTGCTTGTAACCAACATGAGAAACTTCCCAGTTAGCAGAGGCAAGGTTTCTGGAATTTTGAAAGGCTACGGAGGGCTTAGTGCTGCAGTTTTTACTGAAATTTACAGCATAGTGCTTCATAATTCTTCCTCGCACTTTGTGTTGTTCCTTGCCATTGGTATTCTTGTTGTGTGCTGCATTATGATGTTTCTTGTTAGGCCTTGTACCCCGGCTTCTGTTGAAGATGCCACAGACAATTGGCATTTTCTATTTATCCAGTGTTCTAGTGTGGTCTTGGGTTTATATCTTCTCGCAACTACAATTTTCGGTAACATTATTTCATTTAGTGGTACACTTTCTTATATTCTGGTGGCTGTGATGGTTCTTCTTCTGATGGCTCCACTTGCAATCCCTTTAAAGATGACGATATGTCCAAGGAGAGAATCTGATTCAGACTCACCTGATCGACAAGTTGGATCCTCCGACTCTATCACTGGAAATGATGGAAAAACAGAACCACTGCTAGCATCTTCATCTGCTGGAACCCTTGGAAGTTTTTATGATCAAGATGATTCATCTGAGGTGGCCATGCTTCTTGCTTTGGGTGAGGGAGCTGTAAAGCAGAAGAAGAGAAAGCCTAAACGTGGGGAAGATTTTAAGTTTACTGAGGCTGTAATAAAGGCTGATTTCTGGCTACTATTTTTCGTGTTCTTTGTTGGTGTTGGCACTGGGGTAACTGTTCTGAATAATCTGGCCCAAATAGGTATTGCACAAGGTGAGGAAGATACCACAACCTTATTGTCAATTTTCAGCTTTTGTAATTTCGTTGGACGGCTTGGTGGGGGAGTTGTTTCAGAACATTTTGTCAGGACAAAAACAATCCCAAGGACAGCCTGGCTGACATTCACACAGATAATTATGCTCGTTGTATACCTGCTGTTTGCCTATGCTGTCAACGGAACCCTTTATCCTGTCGTTGCCCTTCTTGGTGTCTGCTATGGTGTGCAAGTTTCTGTGATGATCCCCACAGTTTCCGAGCTTTTCGGTTTGAAGCACTTTGGTGTATTGGGTAATGTCATGTCACTAGGAAATCCACTCGGAGCATTCCTTTTCTCAGCCCTTCTTGCAGGGTATGTATATGATACCGAAACGGCAAGGCAGGAAGCTCTAGGCCTCATTGCTTCCGGTGCCTCATGTTTGGGTCCAAATTGCTTCCAGTTGACCTTTTTCGTTCTTTCGGGTGTATGTGCCGCTGGCATCATCTTGAGCATTATTCTGACTTGGAGAATCAAGCCGGTTTACCAAATGCTTTATGCTGGTGGTTCTTTCAGGCTGCCTCAAACTTCTTCAAGTCACTGA 1716 0.465 MLTLKGGTRPPWVSLGASVWVQIASGNTFTFPLYSHSLKSVLGFNQRQLTLLGVANDIGENVGLLPGLACNKFPPWAILLVGSLASFLGYGLIWLALSQTLKSLPYLLLWSALVIAANSSAWLTTSVLVTNMRNFPVSRGKVSGILKGYGGLSAAVFTEIYSIVLHNSSSHFVLFLAIGILVVCCIMMFLVRPCTPASVEDATDNWHFLFIQCSSVVLGLYLLATTIFGNIISFSGTLSYILVAVMVLLLMAPLAIPLKMTICPRRESDSDSPDRQVGSSDSITGNDGKTEPLLASSSAGTLGSFYDQDDSSEVAMLLALGEGAVKQKKRKPKRGEDFKFTEAVIKADFWLLFFVFFVGVGTGVTVLNNLAQIGIAQGEEDTTTLLSIFSFCNFVGRLGGGVVSEHFVRTKTIPRTAWLTFTQIIMLVVYLLFAYAVNGTLYPVVALLGVCYGVQVSVMIPTVSELFGLKHFGVLGNVMSLGNPLGAFLFSALLAGYVYDTETARQEALGLIASGASCLGPNCFQLTFFVLSGVCAAGIILSIILTWRIKPVYQMLYAGGSFRLPQTSSSH* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3048 571 MobiDBLite consensus disorder prediction 275 292 - -
Amo13g3048 571 Pfam Nodulin-like 11 258 IPR010658 -
Amo13g3048 571 Gene3D MFS general substrate transporter like domains 11 204 IPR036259 -
Amo13g3048 571 PANTHER NODULIN-LIKE/MFS TRANSPORTER 2 571 - -
Amo13g3048 571 SUPERFAMILY MFS general substrate transporter 11 195 IPR036259 -
Amo13g3048 571 CDD MFS_Mch1p_like 10 539 - -
Amo13g3048 571 MobiDBLite consensus disorder prediction 266 292 - -
Amo13g3048 571 SUPERFAMILY MFS general substrate transporter 222 551 IPR036259 -
Amo13g3048 571 Gene3D MFS general substrate transporter like domains 344 552 IPR036259 -
Amo13g3048 571 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 2 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3048 Amo-Chr13 82749454 82753249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3048 2 571 Nodulin-like Gene Family AT1G80530 53.846 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3048 - - gmx:100794012 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3048 13 82749454 82753249 Amo03g2257 03 92595547 92599158 hybridization
Amo01g3182 01 103741163 103743747 Amo13g3048 13 82749454 82753249 PCT
Amo13g3048 13 82749454 82753249 Amo01g3182 01 103741163 103743747 PCT