Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3033 ATGGAGACTATTGGCAATTTATGGTCACAACTAGGCTCTATCATGGCATCCATAATGTTTGTATATGCAATATACGAGCAATTCTTCCCACCTTCCCTTCGAACCTACATCCGAAAACACACACAATCCTTCACTAACTTTTTCTACCCTTACATCCAAATCACCTTCCCGGAGTTCACCGGCGAAAAGCTCCGCCGCAGCGACGCCTACACTTGTATCCAGACTTACCTCAGCGAAAACTCCTCCAAAACCGCCAGACGGCTCAAAGCCGAAGTCGTCAAAGACAGTCAAACGCCGCTCGTGTTGAGCATGGCCGACAACGAAGAAATCACGGACGAGTTTAACGGCGTCAAAGTCTGGTGGTACTCCAACCACACCACACCAAAAACGCAGTCGTTTTCGTTCTACCCTGCTTCCGACGAGAAGCGGTTCTTAACSCTGACGTTTCATCGGCGGCACCGCGATCTCRTCACCGGCTCTTACATCAATCACGTGTTGGAKGARGGSAAAGCGATTTCCACGAAGAACCGCCAGTTGAAGCTCTACACGAACAATCCAAGTGATAACTGGTACGGATACAAACGCACCAAGTGGAGTCACATAGTTTTCGAGCACCCTGCGCGGTTCGAGACTCTGGCCATGGATCCGAAGAAGAAACAAGAAATCTTAAACGATCTTAGAGGGTATTTGCTGTACGGTCCTCCAGGGACTGGAAAGTCAACAATGATAGCTGCAATGGCGAATTTCATGAACTATGATGTGTATGATCTTGAATTGACGGCTGTGAAGGAGAACACCGAGTTGAGGAAGCTGTTGATTGAGACAACTGGGAAGTCTATTATCAAAGCTAAGAGTGAAGAGGAGAAGGCAAGCAAGGTAACGCTTTCGGGGCTGTTGAACTTCATTGATGGGATTTGGTCTGCGTGTGGAGGGGAGAGGATTATAATCTTTACGACGAATTTCATCGATAAGCTTGATCCTGCATTGATAAGGAGGGGAAGGATGGACAAGCATATTGAACTTTCTTACTGCGGTTTTGAAGCGTTTAAGGTTCTTGCAAAGAACTATTTGGATGTTGAGAGTCATGGCTTGTTTCCGGTTATTGAGAGGAAGTTGGTTGAGACTGATATGACGCCTGCTGATGTTGCTGAGAATCTTATGCCCAAGTCGGTTGATGAAGATTCGGATACTTGTTTAAGGAATTTGGTTAATATCAATATGAAACAAGCATGGAGAGAGTTAGGCACACTCATGGCCACCACCATGTTTGTGTACACCGTATTCATGCGGTTGTTACCACCACCTCTTCGCGATCGAATCCGACGCCACACCCGAAAAATCATCCATTACTTATACCCTTACATCAGAATCACCTTCCATGAATTCACAGGCGAAAACTACTTCATGAGGAGTGAAGCTTAYACTGCAATCCAAACATACCTTAGCCARCACTCTTCCAAACTAGCCTCAAGGCTCAAAGCCSAAGAGGCGAAATCAAGCAGCAACACCAATTCCCCTTTAAYTTTCAGCATGGATGACAACGAAGAAATAGAAGATGAGTTCCAAGGGATTAAGATTAAGTGGGTTTCAAACAAAATTACTCAGAAAACAGGGTCATTTTCTTGGCACCCGGAAGAGAAAAGGTACTATAAACTCACCYTTCATAGGTGCTATAGAGATATCATAATTGGATCTTACCTCAACCATGTGTTGGAAGAAGCAAGAGCCATTGAAATGAAGAGTAGGGAGTTGAAACTGTATGCAAATAGCAAGACAAAGTGGAGCCACATAGTTTTCGAGCACCCRGCGAGGTTCGAGACCTTGGCAATGGATCCGAAGAAGAAGGAAGAGATGAGAGGGTATTTGCTGTATGGTCCTCCAGGGACYGGAAAGTCAACTATGGTGGCTGCCATGGCTAATTTCATGAASTATGATGTGTATGATCTTGAATTAACCGCCGTGAAGGACAATTCTGAGTTGAGAAAACTGTTGATTAACACGGCAAGTAAGTCCATTATCGTCATTGAAGACATTGATTGCTCACTTGATCTCACTGGCCAGAGGAAGAAAAAGAAGAAGAATGGGAAAAGTGATGCSAGGGAAGAAGGGAAAGRTGCTGTAAAAAGGAGCGACGGCGAAGAAGATGAGAAGGGTAGYAAGGTAACTTTGTCTGGTTTGTTGAATATAATAGATGGAATTTGGTCAGCTTGTGGGGGAGAGAAGATAATGATTTTCACAACCAATTTTGTGGAGAAGCTTGATCCAGCTTTGATTAGGAGAGGGMGAATGGACAAGCACATTGAATTATCATATTGTCGCTATGAAGCATTCAAGATTCTTGCAAAGAACTATTTGGATCTTGAGTACCACAATTTGTTTCCCACAATTGAGAAATTGTTGGAAATGACCAATATGACCCCTGCTGATGTTGCTGAGAATCTCATGCCTAAGTCACTTGATGAGGGAGTGGACACTTGCTTGTGTAATTTGGTTCAAGCTCTTGAGAAATCCAAGCAAGATTCAAACAAGGTAGAGATTAATGAAAAGGGGGAAGTCCAATCTACAAGAGAATAA 2574 0.4371 METIGNLWSQLGSIMASIMFVYAIYEQFFPPSLRTYIRKHTQSFTNFFYPYIQITFPEFTGEKLRRSDAYTCIQTYLSENSSKTARRLKAEVVKDSQTPLVLSMADNEEITDEFNGVKVWWYSNHTTPKTQSFSFYPASDEKRFLTLTFHRRHRDLXTGSYINHVLXEGKAISTKNRQLKLYTNNPSDNWYGYKRTKWSHIVFEHPARFETLAMDPKKKQEILNDLRGYLLYGPPGTGKSTMIAAMANFMNYDVYDLELTAVKENTELRKLLIETTGKSIIKAKSEEEKASKVTLSGLLNFIDGIWSACGGERIIIFTTNFIDKLDPALIRRGRMDKHIELSYCGFEAFKVLAKNYLDVESHGLFPVIERKLVETDMTPADVAENLMPKSVDEDSDTCLRNLVNINMKQAWRELGTLMATTMFVYTVFMRLLPPPLRDRIRRHTRKIIHYLYPYIRITFHEFTGENYFMRSEAYTAIQTYLSQHSSKLASRLKAXEAKSSSNTNSPLXFSMDDNEEIEDEFQGIKIKWVSNKITQKTGSFSWHPEEKRYYKLTXHRCYRDIIIGSYLNHVLEEARAIEMKSRELKLYANSKTKWSHIVFEHPARFETLAMDPKKKEEMRGYLLYGPPGTGKSTMVAAMANFMXYDVYDLELTAVKDNSELRKLLINTASKSIIVIEDIDCSLDLTGQRKKKKKNGKSDAREEGKXAVKRSDGEEDEKGSKVTLSGLLNIIDGIWSACGGEKIMIFTTNFVEKLDPALIRRGRMDKHIELSYCRYEAFKILAKNYLDLEYHNLFPTIEKLLEMTNMTPADVAENLMPKSLDEGVDTCLCNLVQALEKSKQDSNKVEINEKGEVQSTRE* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3033 857 ProSitePatterns AAA-protein family signature. 313 332 IPR003960 GO:0005524|GO:0016887
Amo13g3033 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 389 IPR027417 -
Amo13g3033 857 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 409 618 - -
Amo13g3033 857 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 619 852 - -
Amo13g3033 857 Pfam ATPase family associated with various cellular activities (AAA) 230 342 IPR003959 GO:0005524|GO:0016887
Amo13g3033 857 Pfam ATPase family associated with various cellular activities (AAA) 622 770 IPR003959 GO:0005524|GO:0016887
Amo13g3033 857 PANTHER BCS1 AAA-TYPE ATPASE 409 618 - -
Amo13g3033 857 PANTHER BCS1 AAA-TYPE ATPASE 619 852 - -
Amo13g3033 857 PANTHER BCS1 AAA-TYPE ATPASE 284 404 - -
Amo13g3033 857 Coils Coil 851 857 - -
Amo13g3033 857 CDD AAA 619 771 - -
Amo13g3033 857 CDD AAA 223 343 - -
Amo13g3033 857 Gene3D - 194 339 IPR027417 -
Amo13g3033 857 Gene3D - 575 767 IPR027417 -
Amo13g3033 857 Pfam Domain associated at C-terminal with AAA 29 123 IPR025753 -
Amo13g3033 857 Pfam Domain associated at C-terminal with AAA 432 530 IPR025753 -
Amo13g3033 857 MobiDBLite consensus disorder prediction 695 713 - -
Amo13g3033 857 PANTHER BCS1 AAA-TYPE ATPASE 6 281 - -
Amo13g3033 857 Gene3D - 768 837 - -
Amo13g3033 857 Gene3D - 340 411 - -
Amo13g3033 857 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 6 281 - -
Amo13g3033 857 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 284 404 - -
Amo13g3033 857 MobiDBLite consensus disorder prediction 693 713 - -
Amo13g3033 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 818 IPR027417 -
Amo13g3033 857 SMART AAA_5 617 773 IPR003593 -
Amo13g3033 857 SMART AAA_5 225 345 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3033 Amo-Chr13 81129042 81139986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3033 619 769 Calmodulin-binding Proteins AT3G56690 27.673 3.25e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3033 - - gmx:100813126 605.134